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27 Open 14 Closed
27 Open 14 Closed
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Issues list

convert seurat object to spaCET object
#40 opened Dec 19, 2024 by alipirani88
1
Issues and Suggestions for Malignant Cell Fraction Analysis
#38 opened Nov 26, 2024 by bhyu0217
4
Reference genes for M2 Macrophages
#37 opened Nov 21, 2024 by jakesleighton
1
Work with Visium HD
#35 opened Nov 13, 2024 by alipirani88
7
Clarify Malignant Cell State A and B
#34 opened Nov 5, 2024 by rln0005
1
pathology annotation for colon cancer Slide-seq dataset
#30 opened Apr 5, 2024 by Peiyao-Z
3
SpaCET with other species? And GeneSetScore does not work in Win OS.
#29 opened Apr 1, 2024 by rln0005
4
Error in h(simpleError(msg, call)) :
#28 opened Mar 21, 2024 by Qiannnzzz
5
Can I use the SpaCET for uncancerous tissues with the default parameters?
#27 opened Feb 22, 2024 by DingtaoHu
2
Windows system not support mclapply
#26 opened Feb 22, 2024 by ghjghjghkimo
1
Error in SpaCET.deconvolution
#25 opened Feb 21, 2024 by MartaCasado
4
Differential expression (like in your paper)
#24 opened Dec 19, 2023 by Magisterh1
1
Error in wilcox.test
#23 opened Nov 25, 2023 by thineskrishna
1
deconvolution question (unidentified cell types)
#21 opened Sep 12, 2023 by chrkuo
5
How to visualize multiple cell type in a single figure?
#20 opened Jul 19, 2023 by CyrusWang57
2
Infer malignant cell fraction using CNV, but infer normal cell fraction with matched scRNAseq dataset?
#18 opened Jun 21, 2023 by wlwang20
2
Use Seurat or SingleCellExperiment object as input
#17 opened Jun 16, 2023 by navi202306
15
Error in SpaCET.visualize.spatialFeature Interface
#16 opened Jun 16, 2023 by BenjaminDEMAILLE
1
SpaCET: Deconvolution with a matched scRNA-seq data set error (works without matched reference)
#14 opened May 4, 2023 by dbuszta
15
Input data - platform type
#13 opened Apr 11, 2023 by mkyriak
1
Suggestion : use BiocParallel instead of Parallel
#12 opened Mar 29, 2023 by BenjaminDEMAILLE
1
Error in SpaCET.visualize.colocalization(SpaCET_obj)
#10 opened Mar 20, 2023 by Smilenone
4
Error in cor(x, y, use = use, method = method)
#7 opened Feb 21, 2023 by zhangqiannn
10
I have 15 Spatial samples
#6 opened Feb 20, 2023 by AteeqMKhaliq
1
Deconvolution but Windows does not support 'mc.cores' > 1
#5 opened Feb 17, 2023 by CoconutTang
1
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