Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Deconvolution but Windows does not support 'mc.cores' > 1 #5

Open
CoconutTang opened this issue Feb 17, 2023 · 1 comment
Open

Deconvolution but Windows does not support 'mc.cores' > 1 #5

CoconutTang opened this issue Feb 17, 2023 · 1 comment

Comments

@CoconutTang
Copy link

CoconutTang commented Feb 17, 2023 •
edited
Loading

When I deconvolute my data:
SpaCET_obj <- SpaCET.deconvolution(SpaCET_obj)

Error in parallel::mclapply(1:nSpot, FUN = function(i) { :
Windows does not support 'mc.cores' > 1

if I set mc.cores = 1:
Error in SpaCET.deconvolution(SpaCET_obj, cancerType = "BRCA", mc.cores = 1) :
unused argument (mc.cores = 1)
@beibeiru
Copy link
Collaborator

beibeiru commented Feb 17, 2023 •
edited
Loading

Please use coreNo to set the core number, i.e.,

SpaCET_obj <- SpaCET.deconvolution(SpaCET_obj, cancerType="BRCA", coreNo=1)

Best,
Beibei

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@beibeiru @CoconutTang