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convert seurat object to spaCET object #40

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alipirani88 opened this issue Dec 19, 2024 · 1 comment
Open

convert seurat object to spaCET object #40

alipirani88 opened this issue Dec 19, 2024 · 1 comment

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@alipirani88
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alipirani88 commented Dec 19, 2024

Hi @beibeiru

I get this error while converting seurat V5 object to SpaCET object. I reinstalled the most recent version of SpaCET.

object_primary_16um_238687_SpaCET_obj <- convert.Seurat(object_primary_16um_238687) Error in data.frame(pxl_row = slice@coordinates$imagerow * [email protected]$lowres, : no slot of name "coordinates" for this object of class "VisiumV2"
Any idea how I can fix this?

Thanks,

@beibeiru
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Hi, @alipirani88

Would you please share the Seurat object with me?

Best,
Beibei

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