October 17, 2017, Tuesday

• Bugs and improvements in the community version when testing the three steps DNA methylation workflow
  • When first step is running, just 'pending' is shown slowly when checking 2nd and 3rd steps status
  • First step became 'undefined' and grayed out when 2nd job is running
  • Shared workflow doesn't have job id
  • For diagram, results buttons are not responsive since no job is shared
    • Should we at least allow full name to be displayed?
    • Can we display infos as a popup instead of below?
• General issues
  • Source: exampleData, CyVerseUserData, CyVerseSharedData
  • Should remove exampleData
  • Change to Home, and Shared, maybe add MaizeCode, SorghumDB (not yet?)
• Regarding the workflow
  • Is it necessary to separate Bowtie2 and Bismark?
  • How do we make sure we can swap to BWA or Bowtie1 if separated?
  • For the last step, how do we fix outputs and which outputs should be foced?
    • Think about Genome Browsers tracks
    • We will create a trackhub app to convert files to BigWig and generate trackhub file pointing to data in datastore or SciApps