March 5, 2019, Tuesday

• Workflow update

  • Can we update a workflow with more steps?
  • Right now we are creating a new workflow but it's necessary to add more steps to workflows and update them while keeping the same workflow id (use case is MaizeCODE, we add peaks in addition to ground-level analysis)

• Workflow description bugs (Fixed)

  • Trying to add descriptions to the MaizeCODE workflows but it will disappear once refreshed
  • Also when tried to update through the Swagger interface, got an error saying that workflow is not updated
  • curl works fine

• Chipseq workflow bugs/improvements

  • Zhenyuan's chipseeker is not working, need to fix (We also updated R and re-installed the chipseeker package)
  • Need to generate browser track signals and reduce number of bam outputs
  • Need to rename the apps, create new app?

• Done for the Maize meeting poster

  • Add 'share' to data/MaizeCODE for getting workflow ids, then getting computational metadata
  • Combine metadata from folders to read1 of rep1 file to display in Data Common landing page
  • Add experiment description of each dataset to the MaizeCODE workflow page (from NCBI SRA and add SRA id?)
  • Poster
    • Add screen-shot of data/MaizeCODE page (with dropping down menu, select one workflow, share)
    • Add screen-shot of Data Common landing page with experimental metadata
    • Consider using some slides from 01.08.19_maizecode?

• Ignored for Maize meeting poster

  • Poster
    • Add screen-shot of sharing window, workflow id
    • Add screen-shot of Swagger API and retrieved workflow json given the id
    • Add screen-shot of Data Common page for MaizeCODE data (release the released folder)
    • Maybe remove the SciApps paltform diagram and mention 'ready to compute' if too crowded?