April 24, 2018, Tuesday

• Modifications
  • Fail individual apps with failed workflow
    • Implemented but not tested
  • After login, set up sci_data and sci_data/results folder with Agave if not yet there (cyverse_store branch)
    • sci_data is built by Agave at login
    • sci_data/results is built by maizecode and then make user the owner (cyverse_store and maizecode branch)
• Worflows
  • Methylation
    • Failed on large dataset
    • Combine outputs from 15 files to 4 folders
      • Merge OT, OB, CT_OT, CT_OB into one folder (CG, CHG, CHH)
      • Merge all three text reports into one folder
  • Variant caller
    • EMS
    • GATK
• MaizeCode DCC
  • Where to run the workflow, use XSEDE or CSHL?
  • A MySQL database
  • Pull metadata (and workflow ids) from CyVerse