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94 Open 212 Closed
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Issues list

[TheiaCoV] Reorder flu assembly segments in largest-to-smallest order
#630 opened Sep 20, 2024 by emily-smith1
@Michal-Babins
2
[TheiaCoV_ONT] enable auto detection of model by medaka
#628 opened Sep 19, 2024 by cimendes
[New workflow] Rabies analysis workflow
#626 opened Sep 18, 2024 by michellescribner
@cimendes
[New workflow] TheiaEuk_ONT
#625 opened Sep 18, 2024 by cimendes
@cimendes
[theiaprok docs] links to PHBG instead of PHB
#624 opened Sep 17, 2024 by kapsakcj
1
4
[TheiaProk] add concatenate across lanes functionality
#621 opened Sep 17, 2024 by sage-wright
3
[TheiaProk] Add QC threshold functionality to export_taxon_tables optional task enhancement This issue is a new feature or request
#620 opened Sep 16, 2024 by kapsakcj
[TheiaProk] Output salmonella serogroup as additional column (SISTR)
#618 opened Sep 13, 2024 by kapsakcj
2
Concatenate Column Content: Add ability to add a column with sample names
#617 opened Sep 13, 2024 by jrotieno
[mercury] improve error handling in mercury task enhancement This issue is a new feature or request
#615 opened Sep 11, 2024 by kapsakcj
2
[CI] Update CI to include standalone wfs and other wfs
#614 opened Sep 11, 2024 by kapsakcj
[theiaprok & theiaeuk] output GAMBIT distance & distance threshold to Terra data table
#613 opened Sep 11, 2024 by kapsakcj
[Mercury] silent OOM error with download_terra_table task bug This issue is a bug: something doesn't work right
#612 opened Sep 11, 2024 by kapsakcj
[TheiaProk] add Bandage plot visualization
#611 opened Sep 10, 2024 by fraser-combe
[Assembly_fetch] Add support for downloading from NCBI Virus database enhancement This issue is a new feature or request
#607 opened Sep 6, 2024 by kapsakcj
1
Expose ONT read QC trim parameters
#604 opened Sep 5, 2024 by jrotieno
[cauris_cladetyper] remove all theiacauris references
#601 opened Sep 3, 2024 by sage-wright
[merlin_magic] harden workflow against failures due to sonnei typing disagreement
#600 opened Aug 30, 2024 by AndrewLangvt
[theiacov illumina wfs] Expose optional inputs for ivar consensus sub workflow
#599 opened Aug 28, 2024 by kapsakcj
1
ivar consensus fails silently from a broken pipe
#598 opened Aug 28, 2024 by mdperry
1
@Michal-Babins
3
[TheiaCoV_ONT] Update artic consensus docker image for more recent medaka models
#595 opened Aug 28, 2024 by kapsakcj
@cimendes
1
Mercury for Flu enhancement - label lineage pdm09 for H1N1 samples
#589 opened Aug 20, 2024 by kapsakcj
2
read screen incorrectly counting basepairs bug This issue is a bug: something doesn't work right
#588 opened Aug 19, 2024 by kapsakcj
@kapsakcj
5
theiaprok_ONT request - update dragonflye to latest version enhancement This issue is a new feature or request
#585 opened Aug 15, 2024 by kapsakcj
1
[wf_read_QC_trim_ont] Only run tiptoft if workflow_series is theiaprok
#579 opened Aug 12, 2024 by cimendes
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