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Pull requests: theiagen/public_health_bioinformatics

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Pull requests list

Add kSNP4 task and workflow for phylogenetic/SNP analysis
#759 opened Feb 14, 2025 by MrTheronJ • Draft
11 tasks
[TheiaProk] improve export taxon table functionality
#757 opened Feb 13, 2025 by sage-wright Loading…
5 of 11 tasks
1
@xonq
[New Workflow] Adding Dorado_Basecalling_PHB
#756 opened Feb 12, 2025 by sage-wright Loading…
9 of 11 tasks
1
12
[Mercury] Expose additional inputs for column population
#755 opened Feb 10, 2025 by xonq • Draft
7 of 13 tasks
[TheiaProk wfs] upgrade StxTyper version and OPERON outputs
#750 opened Feb 6, 2025 by fraser-combe • Draft
5 of 11 tasks
1
TheiaCoV Flu optimizations
#749 opened Feb 4, 2025 by kapsakcj • Draft
1 of 13 tasks
1
[New Workflow] AMR-search for neisseria gonorrhoeae samples
#743 opened Feb 3, 2025 by fraser-combe • Draft
4 of 11 tasks
[Artic] Large overhaul for newer versions supporting clair3
#715 opened Jan 8, 2025 by Michal-Babins • Draft
5 of 11 tasks
1
[New Workflow] Flye_denovo to replace DragonFlye
#692 opened Dec 13, 2024 by fraser-combe Loading…
4 of 11 tasks
3
@awh082834
40
[TheiaEuk] TheiaEuk ONT Workflow
#644 opened Oct 8, 2024 by Michal-Babins • Draft
10 tasks
1
@cimendes
1
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