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[theiaprok docs] links to PHBG instead of PHB #624

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kapsakcj opened this issue Sep 17, 2024 · 4 comments · May be fixed by #627
Open

[theiaprok docs] links to PHBG instead of PHB #624

kapsakcj opened this issue Sep 17, 2024 · 4 comments · May be fixed by #627

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@kapsakcj
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🐛

📝 Describe the Issue

I just found some docs that are linking to PHBG instead of PHB WDL code. These need to be updated. One example:

| Tasks | [task_fastp.wdl](https://github.com/theiagen/public_health_bacterial_genomics/blob/main/tasks/quality_control/task_fastp.wdl)<br>[task_trimmomatic.wdl](https://github.com/theiagen/public_health_bacterial_genomics/blob/main/tasks/quality_control/task_trimmomatic.wdl)<br>[task_bbduk.wdl](https://github.com/theiagen/public_health_bacterial_genomics/blob/main/tasks/quality_control/task_bbduk.wdl)<br>[task_fastq_scan.wdl](https://github.com/theiagen/public_health_bacterial_genomics/blob/main/tasks/quality_control/task_fastq_scan.wdl)<br>[task_midas.wdl](https://github.com/theiagen/public_health_bacterial_genomics/blob/main/tasks/taxon_id/task_midas.wdl)<br>[task_kraken2.wdl](https://github.com/theiagen/public_health_bacterial_genomics/blob/main/tasks/taxon_id/task_kraken2.wdl) |

🔁 How to Reproduce

💻 Version Information

@kapsakcj
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There's some more examples if you search for public_health_bacterial_genomics in this repo: https://github.com/search?q=repo%3Atheiagen%2Fpublic_health_bioinformatics%20public_health_bacterial_genomics&type=code

@kapsakcj
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@sage-wright
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sage-wright commented Sep 19, 2024

this is horrific 😱 i am very sorry and this should be fixed please forgive me for i have sinned

@kapsakcj
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hahah it's no big deal 😆

@sage-wright sage-wright linked a pull request Sep 19, 2024 that will close this issue
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