Toolkit for processing sequences in FASTA/Q formats
-
Updated
Aug 10, 2024 - C
#
sequence-analysis
Here are 177 public repositories matching this topic...
A comprehensive library for computational molecular biology
-
Updated
Dec 24, 2024 - Python
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics modern fasta blast seqan fastq samtools sequence-alignment fm-index sequence-analysis cpp20 cpp-concepts
-
Updated
Dec 21, 2024 - C++
Fast alignment and preprocessing of chromatin profiles
-
Updated
Nov 22, 2024 - C++
Fast multi-line FASTA/Q reader in several programming languages
-
Updated
Jun 6, 2021 - C
Cython bindings and Python interface to HMMER3.
bioinformatics python-library python-bindings hidden-markov-model cython-library hmmer sequence-analysis hmmer3
-
Updated
Nov 5, 2024 - Cython
A fast multiple sequence alignment program.
-
Updated
Apr 24, 2024 - C
A Python package for CD-HIT, clustering protein or nucleotide sequences.
-
Updated
Nov 22, 2024 - Python
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
evolution perl next-generation-sequencing vcf population-genetics dnds-estimation molecular-evolution nucleotide fasta-sequences vcf-files diversity-measurement sequence-analysis dnds natural-selection snp-report nucleotide-diversity evolutionary-parameters substitution-rate nei-gojobori
-
Updated
Aug 21, 2023 - Perl
Open source bioinformatics and computational biology toolbox written in F#.
docker bioinformatics fsharp biology datascience biostatistics amino-acids biocontainers bioinformatics-containers nucleotides dataprocessing sequence-analysis
-
Updated
May 14, 2024 - F#
-
Updated
May 16, 2018 - Jupyter Notebook
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
visualization python bioinformatics genomics matplotlib sequence-alignment msa sequence-analysis multiple-sequence-alignment
-
Updated
Dec 1, 2024 - Python
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
python machine-learning deep-learning prediction feature-selection sequence-analysis bioinformatics-tool automated-modelling biomedical-data-analytics
-
Updated
Apr 15, 2024 - Python
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
visualization bioinformatics biology longest-common-subsequence sequence-analysis dotplot repetitive-dna pairwise-comparisons
-
Updated
Nov 26, 2020 - Python
Physicochemical properties, indices and descriptors for amino-acid sequences.
-
Updated
Sep 9, 2024 - Python
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
-
Updated
Oct 27, 2024 - Python
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
-
Updated
Nov 15, 2024
Tools and software library developed by the ONT Applications group
-
Updated
Jan 22, 2021 - Python
Sequence alignment tools
bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis biojulia smith-waterman-alignment sam-files
-
Updated
Aug 7, 2024 - Julia
Improve this page
Add a description, image, and links to the sequence-analysis topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the sequence-analysis topic, visit your repo's landing page and select "manage topics."