nim wrapper for htslib for parsing genomics data files
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Aug 27, 2024 - Nim
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high-throughput-sequencing
Here are 51 public repositories matching this topic...
Python library to access Gene Expression Omnibus Database (GEO)
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Jul 27, 2024 - Jupyter Notebook
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
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Oct 3, 2024 - Java
Sequence alignment tools
bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis biojulia smith-waterman-alignment sam-files
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Aug 7, 2024 - Julia
Find and visualize rearrangements in DNA sequences
data-visualization high-throughput-sequencing dna-sequences alignment-free genome-rearrangment genome-compression
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Apr 14, 2024 - C++
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
validation ngs sequencing scrna-seq umi single-cell fastq high-throughput-sequencing barcodes 10x drop-seq fastq-files dge umi-count fastq-filterpair digital-gene-expression fastq-validation
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Jul 17, 2024 - C
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
bioinformatics rna-seq ngs next-generation-sequencing phylogenetics alignment high-throughput-sequencing hybridization-capture phylogenomics whole-genome-sequencing orthologs paralogs genome-skimming phylotranscriptomics target-capture busco-orthologs busco-lineages
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Dec 23, 2024 - Python
vSNP -- validate SNPs
bam-files snps pipeline genomics vcf phylogenetics snp wgs high-throughput-sequencing high tuberculosis whole-genome-sequencing analysis-pipeline mycobacterium-tuberculosis-complex brucella freebayes
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Sep 19, 2024 - Python
mGEMS Genomic epidemiology with mixed samples
c-plus-plus metagenomics high-throughput-sequencing plate-sweep genomic-epidemiology taxonomic-binning
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Sep 4, 2024 - C++
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
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Jul 13, 2018 - Python
use the noise
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Apr 15, 2020 - Nim
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
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Jul 30, 2019 - Python
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
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Oct 16, 2024 - C++
Infer metadata for your downstream analysis straight from your RNA-Seq data
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Nov 20, 2024 - Python
Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, based on an extension of the BUM-HMM method.
bioinformatics-pipeline bayesian-inference hidden-markov-model high-throughput-sequencing rna-structural-analysis
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Dec 8, 2022 - HTML
Processing, quality control and analysis of GAM datsets
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Jun 13, 2023 - Python
Sargasso disambiguates mixed-species high-throughput sequencing data.
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Feb 6, 2024 - Python
Resolution-independent normalization of Hi-C data
r rcpp cpp11 hi-c high-throughput-sequencing normalization generalized-additive-models fused-lasso binless
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Aug 28, 2019 - C++
vSNP -- validate SNPs
bam-files snps pipeline genomics phylogenetics influenza wgs high-throughput-sequencing bwa-mem tuberculosis whole-genome-sequencing analysis-pipeline vcf-files mycobacterium-bovis mycobacterium-tuberculosis-complex mycobacterium-bovis-af2122 brucella freebayes sars-cov-2
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Oct 1, 2024 - Python
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