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19 Open 49 Closed
19 Open 49 Closed
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Issues list

Question about extract columns from hmmsearch domain output
#82 opened Dec 19, 2024 by Xinpeng021001
1
TopHits from Binary I/O
#81 opened Dec 2, 2024 by arajkovic
2
Running the hmmsearch
#79 opened Oct 14, 2024 by SergeyBaikal
3
Get AllHits instead of TopHits question Further information is requested
#77 opened Sep 25, 2024 by jpjarnoux
2
Difference in e-value between HMMER and pyHMMER question Further information is requested
#75 opened Sep 24, 2024 by jpjarnoux
3
Parameter to remove insert column in hmmalign
#74 opened Aug 16, 2024 by apcamargo
Return a single TopHits object when passing a single hmm to hmmsearch
#73 opened Aug 16, 2024 by alex-hh
PyHmmer sets CPU float behaviour globally, potentially causing issues in other libraries bug Something isn't working building Related to building the package
#71 opened Jul 19, 2024 by jakobnissen
1
BUG: plan7.HMM.validate() fails to raise exceptions with ill formatted hmm profiles bug Something isn't working external Issue comes from a dependency or some external code.
#69 opened May 31, 2024 by Sann5
1
[question] PyInfernal? question Further information is requested
#68 opened Apr 29, 2024 by tomdstanton
3
Apply cutoffs for domains
#65 opened Apr 7, 2024 by apcamargo
3
Guess bit_cutoffs in hmmsearch
#64 opened Mar 29, 2024 by jpjarnoux
cannot reproduce example for pyhmmer.hmmer.hmmsearch question Further information is requested
#58 opened Dec 9, 2023 by erfanshekarriz
1
[Feature Request] Internally assigning Z for HMM class
#57 opened Dec 9, 2023 by erfanshekarriz
3
Production stable or WIP question Further information is requested
#45 opened Jun 27, 2023 by oschwengers
1
Possibility to filter alignment results on coverage between HMM and target question Further information is requested
#27 opened Nov 28, 2022 by jpjarnoux
6
zip argument #1 must support iteration error + other question question Further information is requested
#17 opened Apr 18, 2022 by willhuynh11
1
ValueError: Could not determine format of file: '/dbfs/mnt/LuxC.sto' question Further information is requested
#10 opened Sep 22, 2021 by lzhangUT
3
Use hpc_hmmsearch enhancement New feature or request
#8 opened Jul 7, 2021 by apcamargo
6
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