Sequence alignment tools

Python implementation of Striped Smith-Waterman Algorithm

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

A header-only templated C++17-library for fast and versatile sequence alignment computations.

Global and Local Sequence Alignment

Implement parallel Smith Waterman algorithm on CUDA

implementation and visualizations for sequence alignment algorithms

Applications that compute pairwise alignments of two biological sequences

Web App para alinhamento de sequências de DNA

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

Smith-Waterman alignment implementation

This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.

Implementation of Sequence Alignment using Needleman-Wunsch and Smith-Waterman algorithms with fixed scoring values.

Implementation of Smith-Waterman local alignment model- find closest local alignments in two given amino acid sequences. BLOSUM was used as the scoring matrix.

Smith Waterman algorithm Java implementation

AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.

MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.

R package for global alignment between two genomic sequences