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  1. zarp zarp Public

    The Zavolab Automated RNA-seq Pipeline

    Python 35 5

  2. htsinfer htsinfer Public

    Infer metadata for your downstream analysis straight from your RNA-Seq data

    Python 11 23

  3. Dockerfiles Dockerfiles Public

    Dockerfile repository of the Zavolan Lab

    Perl 9 2

  4. polyAsite_workflow polyAsite_workflow Public

    Pipeline for the processing of 3' end sequencing libraries

    Python 9 2

  5. PAQR_KAPAC PAQR_KAPAC Public

    scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site…

    Python 8 4

  6. TECtool TECtool Public

    TECtool uses mRNA and 3’ end sequencing data to identify novel terminal exons.

    Python 7 5

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  • zarp Public

    The Zavolab Automated RNA-seq Pipeline

    zavolanlab/zarp’s past year of commit activity
    Python 35 Apache-2.0 5 14 (1 issue needs help) 2 Updated Dec 22, 2024
  • mirflowz Public

    Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.

    zavolanlab/mirflowz’s past year of commit activity
    Python 6 MIT 1 26 2 Updated Dec 20, 2024
  • IPA-immune Public
    zavolanlab/IPA-immune’s past year of commit activity
    Python 0 Apache-2.0 0 1 0 Updated Dec 11, 2024
  • htsinfer Public

    Infer metadata for your downstream analysis straight from your RNA-Seq data

    zavolanlab/htsinfer’s past year of commit activity
    Python 11 Apache-2.0 23 6 0 Updated Nov 20, 2024
  • zarp-cli Public

    A user-friendly command-line interface for the ZARP RNA-seq analysis workflow

    zavolanlab/zarp-cli’s past year of commit activity
    Python 5 Apache-2.0 1 9 0 Updated Nov 1, 2024
  • SCINPAS Public

    Single Cell Identification of Novel PolyA Sites.

    zavolanlab/SCINPAS’s past year of commit activity
    Python 3 Apache-2.0 0 4 0 Updated Sep 18, 2024
  • polyAsite_Atlas_3 Public

    The repository contains the data related to polyAsite Atlas v3 database and paper

    zavolanlab/polyAsite_Atlas_3’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 11, 2024
  • zavolanlab/experimental-determination-elongation-rates’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 22, 2024
  • zavolanlab/mapping-translation-rates’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 22, 2024
  • zavolanlab/bCLIP_Stefanie_Jonas’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 2, 2024

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