Prerequisites

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Torbjørn Rognes edited this page Apr 17, 2016 · 5 revisions

Prerequisites

Basic unix competence and basic knowledge of bioinformatics applications is required. Basic programming skills, preferably in Python, as well.

List of subjects assumed students are familiar with before taking the course:

fasta
fastq
genbank
bam
vcf
gene
genome
transcriptome
high throughput sequencing
genome assembly
contig
scaffold
coverage
SNP
blast
multiple sequence alignment
dynamic programming
de novo genome assembly algorithm
short read mapping
variant calling

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