Concepts

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Torbjørn Rognes edited this page Mar 9, 2022 · 10 revisions

Concepts

Concepts we want to teach in the course are listed below.

Different ways of parallelisation

Thread Model
Message Passing Model

Implementation: python

Profiling (measuring performance)

cpu usage
memory usage
disk I/O

HPC architecture

single server
HPC cluster (Traditional infrastructure and Cloud)

Accessing HPC infrastructure

interactive (ssh)
queueing system (SLURM and HTCondor)
containers

Workflows

sdag, arrayrun (SLURM)
Galaxy workflow