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theiagen / public_health_bioinformatics Public

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[New Utility] Workflow to rename FASTQ files (non-destructive)#267

Merged

sage-wright merged 7 commits intomaintheiagen/public_health_bioinformatics:mainfrom im-utilities-rename-filestheiagen/public_health_bioinformatics:im-utilities-rename-filesCopy head branch name to clipboard

Dec 20, 2023

+126

Conversation Commits7 (7)Checks Files changed

Commits

Commits on Dec 13, 2023

first iteration
cimendes
committed
second iteration - handle uncompress files and optional read2
cimendes
committed
properly rename single-end files to not have the _1 notation
cimendes
committed
use R1 and R2 .fastq.gz as output names
cimendes
committed
rename outputs
cimendes
committed
Add Rename_FASTQ_PHB to dockstore file
cimendes
committed

Commits on Dec 20, 2023

embracing the PE and SE tasks because of WDL limitations
cimendes
committed

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