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Update task_augur_refine iqd back to 4 (#268)
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jrotieno authored Dec 15, 2023
1 parent 6fdf894 commit 705626e
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions tasks/phylogenetic_inference/augur/task_augur_refine.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ task augur_refine {
String date_inference = "marginal" # assign internal nodes to their marginally most likley dates (joint, marginal)
String? branch_length_inference # branch length mode of treetime to use (auto, joint, marginal, input; default: auto)
String? coalescent # coalescent time scale in units of inverse clock rate (float), optimize as scalar ("opt") or skyline (skyline)
Int? clock_filter_iqd # remove tips that deviate more than n_iqd interquartile ranges from the root-to-tip vs time regression
Int? clock_filter_iqd = 4 # remove tips that deviate more than n_iqd interquartile ranges from the root-to-tip vs time regression
String divergence_units = "mutations" # units in which sequence divergences is exported ("mutations" or "mutations-per-site")
Int disk_size = 100
Expand Down Expand Up @@ -61,4 +61,4 @@ task augur_refine {
preemptible: 0
maxRetries: 3
}
}
}

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