Code

Q score both read directions#72

Code

Merged

gregcaporaso merged 24 commits intoqiime2:devqiime2/q2-quality-filter:devfrom colinvwood:q-score-both-read-directionscolinvwood/q2-quality-filter:q-score-both-read-directionsCopy head branch name to clipboardDec 13, 2024

+1,245-536

Commits

Commits on Dec 4, 2024

• WIP: q_score refactor

  colinvwood

  committed
  137880a

• remove old tests, add new tests

  colinvwood

  committed
  8f6b0c8

• parameter help text refactor

  colinvwood

  committed
  8730f63

• figure out single/paired end type map

  colinvwood

  committed
  a1c5f57

• WIP: support paired end reads

  colinvwood

  committed
  cbf336c

Commits on Dec 5, 2024

• WIP: paired end read processing

  colinvwood

  committed
  321b1e9

Commits on Dec 6, 2024

• _process_record and _align_records tests

  colinvwood

  committed
  5d5f273

• _is_retained tests

  colinvwood

  committed
  de3e4a4

• tests restructuring

  colinvwood

  committed
  7937628

• type map

  colinvwood

  committed
  adea429

• finalize paired end handling, paired end tests

  colinvwood

  committed
  1dad260

Commits on Dec 9, 2024

• paired end tests

  colinvwood

  committed
  e3a1fc6

• package data

  colinvwood

  committed
  5e589aa

• package data pt. 2

  colinvwood

  committed
  5ecb264

• gitignore qza override

  colinvwood

  committed
  e174ffc

Commits on Dec 11, 2024

• don't do truncation alignment

  colinvwood

  committed
  46ce373

Commits on Dec 12, 2024

• Update q2_quality_filter/_filter.py

  Show description for 2901aa7
  

  colinvwood

  and

  gregcaporaso

  authored
  2901aa7

• Update q2_quality_filter/tests/test_filter.py

  Show description for 5898dab
  

  colinvwood

  and

  gregcaporaso

  authored
  5898dab

• Update q2_quality_filter/tests/test_filter.py

  Show description for 06e1725
  

  colinvwood

  and

  gregcaporaso

  authored
  06e1725

• Update q2_quality_filter/_filter.py

  Show description for 23752a0
  

  colinvwood

  and

  gregcaporaso

  authored
  23752a0

• Update q2_quality_filter/tests/test_filter.py

  Show description for 0e934db
  

  colinvwood

  and

  gregcaporaso

  authored
  0e934db

• Update q2_quality_filter/_filter.py

  Show description for 8ccf732
  

  colinvwood

  and

  gregcaporaso

  authored
  8ccf732

Commits on Dec 13, 2024

• suggestions

  colinvwood

  committed
  678be72

• use _ReadDirectionTypes in q_score signature

  colinvwood

  committed
  ff0f7ee