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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 496 241

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 77 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 2 0 Updated Mar 14, 2025
  • q2cli Public

    Command line interface for QIIME 2

    qiime2/q2cli’s past year of commit activity
    Python 19 BSD-3-Clause 24 14 2 Updated Mar 13, 2025
  • q2galaxy Public

    Generate Galaxy tool descriptions automatically from QIIME 2 actions.

    qiime2/q2galaxy’s past year of commit activity
    Python 19 BSD-3-Clause 17 10 1 Updated Mar 13, 2025
  • q2-feature-table Public

    QIIME 2 plugin supporting operations on feature tables.

    qiime2/q2-feature-table’s past year of commit activity
    Python 2 BSD-3-Clause 39 24 (2 issues need help) 2 Updated Mar 13, 2025
  • q2templates Public

    Design template package for QIIME 2 Plugins

    qiime2/q2templates’s past year of commit activity
    Python 4 BSD-3-Clause 16 0 1 Updated Mar 13, 2025
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 22 8 1 Updated Mar 13, 2025
  • q2-vizard Public

    The first choice of wizard lizards for interactive, generalized microbiome data visualization!

    qiime2/q2-vizard’s past year of commit activity
    Python 1 BSD-3-Clause 9 6 2 Updated Mar 13, 2025
  • q2-taxa Public
    qiime2/q2-taxa’s past year of commit activity
    Python 3 BSD-3-Clause 29 43 1 Updated Mar 13, 2025
  • q2-sample-classifier Public

    QIIME 2 plugin for machine learning prediction of sample data.

    qiime2/q2-sample-classifier’s past year of commit activity
    Python 6 BSD-3-Clause 36 15 (1 issue needs help) 1 Updated Mar 13, 2025
  • qiime2/sphinx-ext-qiime2’s past year of commit activity
    Python 2 BSD-3-Clause 5 2 1 Updated Mar 13, 2025

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