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detaxizer
Publicsarek
PublicAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencingrnafusion
Public- Compare the quality of multiple genomes, along with their annotations.
- A pipeline for network-based disease module identification.
- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
- Assembly and binning of metagenomes
test-datasets
Public- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
denovotranscript
Public- Amplicon sequencing analysis workflow using DADA2 and QIIME2
setup-nextflow
Publiccellpainting
Publicdrop
Publicfastqrepair
PublicA pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disorderedraredisease
PublicCall and score variants from WGS/WES of rare disease patients.sopa
PublicNextflow version of Sopa - spatial omics pipeline and analysisvariantbenchmarking
Publicproteinfold
PublicProtein 3D structure prediction pipelinenf-core-utils
Publicrarevariantburden
PublicPipeline for performing consistent summary count based rare variant burden test, which is useful when we only have sequenced cases data. For example, we can compare the cases against public summary count data, such as gnomAD.