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Issues: nf-core/tools

New functionality: nf-core config create
#2731 opened Feb 6, 2024 by jfy133
Open 1
[Project] Make nf-core create more customisable
#2340 opened Jun 27, 2023 by ewels
Open 3
[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
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253 Open 788 Closed
253 Open 788 Closed
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Issues list

Add ability to install a subworkflow composed nf-core and non-nfcore modules/subworkflows. enhancement high-priority
#3175 opened Sep 17, 2024 by kenibrewer
2
Add ability to install a nf-core module into a private module library enhancement high-priority
#3174 opened Sep 17, 2024 by kenibrewer
5
Comment in 'nf-core create-params-file --show-hidden' indicates hidden parameters are missing. Params are there bug Something isn't working
#3172 opened Sep 16, 2024 by FriederikeHanssen
Remove import statements from pipeline template high-priority template nf-core pipeline/component template
#3165 opened Sep 11, 2024 by ewels 3.0
1
Singularity container symlinks not consistently created bug Something isn't working download nf-core download
#3162 opened Sep 7, 2024 by muffato
1
@muffato
error_retry label not recognized as standard label for certain module structures bug Something isn't working good-first-issue linting
#3160 opened Sep 6, 2024 by Felix-Kummer
2
nf-core pipelines bump-version command should update pipeline version in nf-test snapshots enhancement
#3158 opened Sep 4, 2024 by maxulysse
modules update with patch deletes files in templates bug Something isn't working
#3157 opened Sep 3, 2024 by FriederikeHanssen
1
Schema: Support multi-line text inputs schema
#3145 opened Aug 28, 2024 by ewels
1
Pass a list of modules/subworkflows(files) to nf-core modules lint enhancement
#3140 opened Aug 26, 2024 by edmundmiller
Add a linting test for the metro map enhancement
#3135 opened Aug 23, 2024 by maxulysse
Remove try-catch blocks around institutional configs high-priority template nf-core pipeline/component template
#3132 opened Aug 21, 2024 by bentsherman 3.0
14
Move igenomes config into pipeline code high-priority
#3131 opened Aug 21, 2024 by bentsherman 3.0
3
Add -w, --fail-warned option to nf-core schema lint enhancement
#3123 opened Aug 16, 2024 by theJasonFan
Lint for test data paths and produce a warning/error if the config map is used? enhancement
#3114 opened Aug 13, 2024 by GallVp
@GallVp
MultiQC results not cacheable bug Something isn't working
#3110 opened Aug 12, 2024 by apeltzer
nf-core sync does not respect existing template config on dev branch
#3109 opened Aug 8, 2024 by awgymer
modules linting: Check that version.yml has version of all items in environment.yml linting modules Related to tools for working with DSL2 modules
#3107 opened Aug 8, 2024 by mashehu
Print test directory path in output from nf-core test enhancement
#3106 opened Aug 7, 2024 by erikrikarddaniel
Test pipelines with Singularity & Conda enhancement infrastructure pipeline-testing template nf-core pipeline/component template
#3098 opened Aug 5, 2024 by mirpedrol
1
Manual include or exclude specific files in template
#3088 opened Jul 30, 2024 by adamrtalbot
Fail to send the completion email bug Something isn't working
#3080 opened Jul 25, 2024 by HaidYi
Allow numbers in pipeline names enhancement
#3067 opened Jul 16, 2024 by adamrtalbot
3
Use resource limits instead of setting process directives in nf-test configuration enhancement
#3066 opened Jul 15, 2024 by adamrtalbot
Lint for pipeline nf-test contents enhancement
#3065 opened Jul 15, 2024 by adamrtalbot
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