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Pull requests: nf-core/modules

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Pull requests list

Adding celda/decontx module
#6960 opened Nov 8, 2024 by lea-lenhardtackovic Loading…
12 of 14 tasks
11
Add Coverm contigs module Ready for Review
#6959 opened Nov 8, 2024 by prototaxites Loading…
11 of 17 tasks
1
Add GPU-based tests
#6953 opened Nov 7, 2024 by mashehu Loading…
11
Starting point for differential subworkflow
#6951 opened Nov 7, 2024 by pinin4fjords • Draft
17 tasks
Add missing file input to bcftools/annotate
#6942 opened Nov 6, 2024 by fellen31 Loading…
17 tasks
Remove langage server warnings
#6937 opened Nov 5, 2024 by maxulysse Loading…
17 tasks
2
Add coptr module
#6935 opened Nov 5, 2024 by ramirobarrantes Loading…
17 tasks
nf-test for ashlar
#6931 opened Nov 4, 2024 by kbestak Loading…
10 of 14 tasks
1
5
Migrating basicpy to nf-test
#6929 opened Nov 4, 2024 by kbestak Loading…
6 of 17 tasks
1
3
New module: anndata/getsize module new module Adding a new module Ready for Review
#6925 opened Nov 2, 2024 by LeonHafner Loading…
12 of 14 tasks
1
@LeonHafner
6
fix read variable in for loop
#6921 opened Nov 1, 2024 by MartinPippel Loading…
17 tasks
@MartinPippel
2
Bump GUNC and add gunc/run test
#6920 opened Nov 1, 2024 by dialvarezs • Draft
1 of 17 tasks
2
bump ALL gatk4 modules
#6917 opened Oct 31, 2024 by matthdsm Loading…
17 tasks
9
fastqe
#6909 opened Oct 30, 2024 by edmundmiller • Draft
Add scds module
#6907 opened Oct 30, 2024 by cakirb Loading…
11 of 17 tasks
7
move torchtune to nfcore
#6901 opened Oct 29, 2024 by caraiz2001 Loading…
2 of 17 tasks
11
Add STIMULUS/CHECKTORCHMODEL
#6898 opened Oct 29, 2024 by itrujnara Loading…
12 of 14 tasks
2
2
Add stimulus analysisdefault
#6893 opened Oct 29, 2024 by tombch Loading…
7 of 17 tasks
Add stimulus transform
#6886 opened Oct 29, 2024 by luisas Loading…
12 of 14 tasks
3
Adding Stimulus CSV
#6884 opened Oct 29, 2024 by yocra3 Loading…
11 of 17 tasks
1
@luisas
3
parabricks/applybqsr version updated and tests migrated to nf-test
#6881 opened Oct 29, 2024 by gitanoqevaporelmundoentero Loading…
2 of 17 tasks
1
@famosab
10
New module: SoupX ambient RNA removal draft new module Adding a new module
#6879 opened Oct 28, 2024 by LeonHafner • Draft
6 of 13 tasks
1
3
Change sed regex for version reporting in pigz modules
#6878 opened Oct 28, 2024 by ljwharbers Loading…
1
11
Align parabricks subworkflow new subworkflow
#6876 opened Oct 28, 2024 by famosab Loading…
17 tasks
1
@famosab @Furentsu
Initial version of the purecn/dx module (#2941)
#6875 opened Oct 28, 2024 by lbeltrame • Draft
8 of 17 tasks
1
@lbeltrame
1
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