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    56 repositories

    • seqwise-prediction

      Public
      a deep learning tool for sequence wise prediction of protein classes
      Python
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • Retina-SpliceAI

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • alphafold_finetune

      Public
      Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
      Python
      •
      Apache License 2.0
      •19•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • gdomain

      Public
      gdomain tool
      Python
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • Neural-Retina-Atlas

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • pmhc-diffusion-model

      Public
      Code to build diffusion models for pMHC structural data
      Python
      •0•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • hssp

      Public
      Create DSSP and HSSP files
      C++
      •
      GNU General Public License v3.0
      •18•83•29•0•Updated Jul 18, 2024Jul 18, 2024

    • mrs

      Public
      Maarten's Retrieval Service
      C
      •
      Boost Software License 1.0
      •3•0•39•2•Updated Mar 11, 2024Mar 11, 2024

    • FAIRDataPoint

      Public
      for search extension
      Java
      •
      MIT License
      •40•0•0•0•Updated Feb 16, 2024Feb 16, 2024

    • xssp-api

      Public
      xssp-rest is a REST wrapper around the mkhssp and mkdssp applications.
      Python
      •4•0•12•4•Updated Jan 26, 2024Jan 26, 2024

    • FAIRDataPoint-client

      Public
      FAIR Data Point Client application for browsing the metadata and administration.
      Vue
      •
      MIT License
      •9•0•0•0•Updated Dec 15, 2023Dec 15, 2023

    • compact-bio

      Public
      comparative clustering tool
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 14, 2023Nov 14, 2023

    • hpi_isoseq_paper

      Public
      Analysis scripts to accompany the manuscript titled "Multi-omic profiling of pathogen-stimulated primary immune cells"
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2023Oct 13, 2023

    • NA12878-saav-detection

      Public
      Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research
      Jupyter Notebook
      •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • hommod

      Public
      Homology Modeling Service
      Python
      •3•1•7•3•Updated Sep 12, 2023Sep 12, 2023

    • dssp

      Public
      The DSSP building software
      C++
      •
      GNU General Public License v3.0
      •20•37•1•1•Updated Aug 7, 2023Aug 7, 2023

    • reprof-api

      Public
      RESTful service for running reprof
      Python
      •1•0•6•1•Updated Jul 18, 2023Jul 18, 2023

    • wsv_rest

      Public
      A restful service, used as wrapper around whatif wsv commands
      Python
      •0•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • SUsPECT

      Public
      Variant effect prediction based on custom long-read transcriptomes
      Nextflow
      •
      Apache License 2.0
      •2•7•0•0•Updated Jun 15, 2023Jun 15, 2023

    • whynot2

      Public
      Python
      •2•0•14•3•Updated May 1, 2023May 1, 2023

    • bdb-web

      Public
      BDB-web
      Python
      •2•0•3•1•Updated May 1, 2023May 1, 2023

    • serendip_api

      Public
      restful service that runs serendip for you
      Python
      •1•0•0•3•Updated May 1, 2023May 1, 2023

    • kmad-web

      Public
      HTML
      •1•1•7•5•Updated Apr 18, 2023Apr 18, 2023

    • kmad

      Public
      Knowledge based multiple sequence alignment for intrinsically disordered proteins
      C++
      •
      GNU General Public License v3.0
      •4•8•7•0•Updated Apr 17, 2023Apr 17, 2023

    • BrainDM1

      Public
      Scripts and files to reproduce the analysis of "A comprehensive atlas of fetal splicing patterns in the brain of adult myotonic dystrophy type 1 patients".
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

    • metadome

      Public
      MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
      geneticsproteinsgene-annotationgenespathogenicityvariant-annotationsprotein-domainspathogenic-variantsprotein-annotationgenetic-tolerance
      Python
      •
      MIT License
      •2•7•20•4•Updated Mar 10, 2023Mar 10, 2023

    • databanks

      Public
      Perl
      •0•0•9•1•Updated Feb 9, 2023Feb 9, 2023

    • galiphy

      Public
      ranking of genes using human phenotypes
      HTML
      •1•2•1•2•Updated Feb 2, 2023Feb 2, 2023

    • synthetic_cells

      Public
      Python
      •1•0•0•0•Updated Nov 28, 2022Nov 28, 2022

    • DM1_blood_RNAseq

      Public
      R
      •0•0•0•0•Updated Sep 26, 2022Sep 26, 2022