Red Blood Cell Instancing and Segmentation using Deep Learning and Synthetic Data

The code belonging to the paper: Deep learning trained on synthetic cells to quantify red blood cell deformability in malaria

Environment Prerequisites

Conda

1. Install miniconda
2. Create environment using environment.yml:
   conda env create -f environment.yml
3. Activate environment:
   conda activate SyntheticCells

Data

The microfluidic device videos have been deposited on the Zenodo repository webserver.

(https://doi.org/10.5281/zenodo.7374342)