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Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research

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Comparison of SAAV detection methods using NAA12878

Project relating to detection of variants on the protein level of NA12878

Citation: Salz et al 2021 Journal of Proteome Research https://pubs.acs.org/doi/full/10.1021/acs.jproteome.1c00264

There are 3 components to the project, chronologically:

  • The creation of the search libraries
  • Running of ionbot
  • Analysis of ionbot output

At the time of writing this, ionbot is proprietary and not yet freely available. Thus, the information for only the first and last components listed above are available in this repository.

See READMEs in each folder for details.

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Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research

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