Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove release announcement from non nf-core pipelines #3024

Closed
wants to merge 219 commits into from

Commits on Aug 20, 2023

  1. Configuration menu
    Copy the full SHA
    513de95 View commit details
    Browse the repository at this point in the history

Commits on Aug 21, 2023

  1. Configuration menu
    Copy the full SHA
    0e8204e View commit details
    Browse the repository at this point in the history
  2. Remove unusued imports

    ewels committed Aug 21, 2023
    Configuration menu
    Copy the full SHA
    e37d2e5 View commit details
    Browse the repository at this point in the history

Commits on Aug 22, 2023

  1. Configuration menu
    Copy the full SHA
    ee12eb5 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    dd18bcc View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    486f180 View commit details
    Browse the repository at this point in the history

Commits on Aug 23, 2023

  1. Configuration menu
    Copy the full SHA
    5b8cfd5 View commit details
    Browse the repository at this point in the history

Commits on Aug 24, 2023

  1. Configuration menu
    Copy the full SHA
    0a40dab View commit details
    Browse the repository at this point in the history
  2. add more custom features

    mirpedrol committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    39b9e3c View commit details
    Browse the repository at this point in the history

Commits on Aug 25, 2023

  1. Configuration menu
    Copy the full SHA
    25c9fa1 View commit details
    Browse the repository at this point in the history

Commits on Aug 28, 2023

  1. animate help box

    mirpedrol committed Aug 28, 2023
    Configuration menu
    Copy the full SHA
    610cbd9 View commit details
    Browse the repository at this point in the history

Commits on Aug 29, 2023

  1. Configuration menu
    Copy the full SHA
    6677144 View commit details
    Browse the repository at this point in the history

Commits on Aug 30, 2023

  1. Configuration menu
    Copy the full SHA
    8bac0be View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    43db7f6 View commit details
    Browse the repository at this point in the history

Commits on Aug 31, 2023

  1. Configuration menu
    Copy the full SHA
    99f426a View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    09bd5db View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    9f121f7 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    0c77029 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    bf9a541 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    fec5e3e View commit details
    Browse the repository at this point in the history
  7. use kwargs

    mirpedrol committed Aug 31, 2023
    Configuration menu
    Copy the full SHA
    0ef16b5 View commit details
    Browse the repository at this point in the history

Commits on Sep 1, 2023

  1. Configuration menu
    Copy the full SHA
    238767f View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    7b4a342 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    b3fa25e View commit details
    Browse the repository at this point in the history
  4. update changelog

    mirpedrol committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    6ff69b2 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    17ba971 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    0c64de8 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    7720117 View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    cb62be3 View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    da1c68f View commit details
    Browse the repository at this point in the history

Commits on Oct 3, 2023

  1. Configuration menu
    Copy the full SHA
    3c14dd7 View commit details
    Browse the repository at this point in the history

Commits on Nov 2, 2023

  1. Some minor CSS tweaks

    ewels committed Nov 2, 2023
    Configuration menu
    Copy the full SHA
    e401a6a View commit details
    Browse the repository at this point in the history

Commits on Nov 3, 2023

  1. Configuration menu
    Copy the full SHA
    8b9ad35 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    4c237e2 View commit details
    Browse the repository at this point in the history

Commits on Nov 6, 2023

  1. fix pytests

    mirpedrol committed Nov 6, 2023
    Configuration menu
    Copy the full SHA
    8318e0c View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    c7e057d View commit details
    Browse the repository at this point in the history
  3. fix test_remove_patch

    mirpedrol committed Nov 6, 2023
    Configuration menu
    Copy the full SHA
    c2c0561 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    ef9ea81 View commit details
    Browse the repository at this point in the history

Commits on Nov 10, 2023

  1. Configuration menu
    Copy the full SHA
    798dad9 View commit details
    Browse the repository at this point in the history

Commits on Nov 13, 2023

  1. Configuration menu
    Copy the full SHA
    4758c7d View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    665d378 View commit details
    Browse the repository at this point in the history

Commits on Nov 14, 2023

  1. Configuration menu
    Copy the full SHA
    19f60bc View commit details
    Browse the repository at this point in the history
  2. add first snapshot tests

    mirpedrol committed Nov 14, 2023
    Configuration menu
    Copy the full SHA
    887f372 View commit details
    Browse the repository at this point in the history

Commits on Dec 5, 2023

  1. Configuration menu
    Copy the full SHA
    7758698 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    0dbe982 View commit details
    Browse the repository at this point in the history

Commits on Jan 5, 2024

  1. Configuration menu
    Copy the full SHA
    9c25603 View commit details
    Browse the repository at this point in the history
  2. ruff code modifications

    mirpedrol committed Jan 5, 2024
    Configuration menu
    Copy the full SHA
    3908163 View commit details
    Browse the repository at this point in the history
  3. update snapshots

    mirpedrol committed Jan 5, 2024
    Configuration menu
    Copy the full SHA
    208d832 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    bebf067 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    7ade926 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    7049277 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    41fcc27 View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    cfa0804 View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    a85f1dd View commit details
    Browse the repository at this point in the history
  10. update app snapshots

    mirpedrol committed Jan 5, 2024
    Configuration menu
    Copy the full SHA
    456a4be View commit details
    Browse the repository at this point in the history

Commits on Jan 8, 2024

  1. fix typing error

    mirpedrol committed Jan 8, 2024
    Configuration menu
    Copy the full SHA
    bb6cc97 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    abdffef View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    2e396d9 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    3329411 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    f5551bc View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    cbce046 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    62c4b3e View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    f04ad5e View commit details
    Browse the repository at this point in the history
  9. fix pytests

    mirpedrol committed Jan 8, 2024
    Configuration menu
    Copy the full SHA
    baa3412 View commit details
    Browse the repository at this point in the history

Commits on Jan 9, 2024

  1. add loading messages

    mirpedrol committed Jan 9, 2024
    Configuration menu
    Copy the full SHA
    acd7201 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    6b4ed9c View commit details
    Browse the repository at this point in the history

Commits on Jan 19, 2024

  1. Configuration menu
    Copy the full SHA
    97bca8b View commit details
    Browse the repository at this point in the history

Commits on Feb 19, 2024

  1. Configuration menu
    Copy the full SHA
    0525d9c View commit details
    Browse the repository at this point in the history
  2. more formatting and docs

    mirpedrol committed Feb 19, 2024
    Configuration menu
    Copy the full SHA
    29afad0 View commit details
    Browse the repository at this point in the history
  3. add button to go back

    mirpedrol committed Feb 19, 2024
    Configuration menu
    Copy the full SHA
    2dcb0f1 View commit details
    Browse the repository at this point in the history

Commits on Feb 20, 2024

  1. Configuration menu
    Copy the full SHA
    17bb9e9 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    5445b74 View commit details
    Browse the repository at this point in the history

Commits on Feb 21, 2024

  1. Configuration menu
    Copy the full SHA
    4ecb445 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    536e3be View commit details
    Browse the repository at this point in the history

Commits on Mar 4, 2024

  1. Configuration menu
    Copy the full SHA
    599d2e0 View commit details
    Browse the repository at this point in the history

Commits on Mar 6, 2024

  1. Configuration menu
    Copy the full SHA
    2943098 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    3cfdc78 View commit details
    Browse the repository at this point in the history

Commits on Mar 7, 2024

  1. Configuration menu
    Copy the full SHA
    e7687e9 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    1debc4b View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    41e99a1 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    67db794 View commit details
    Browse the repository at this point in the history

Commits on Apr 2, 2024

  1. Fix merge conflicts

    ewels committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    a4a67bb View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    ed70990 View commit details
    Browse the repository at this point in the history
  3. Raw strings for nf-core ascii artwork

    Avoids warnings about invalid escape sequences
    ewels committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    3a54023 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    bfaf3b1 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    ea99d69 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    d89218f View commit details
    Browse the repository at this point in the history
  7. Display tweaks

    ewels committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    19a6144 View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    0bfae29 View commit details
    Browse the repository at this point in the history

Commits on Apr 3, 2024

  1. Configuration menu
    Copy the full SHA
    a1d8916 View commit details
    Browse the repository at this point in the history
  2. Merge branch 'dev' of github.com:nf-core/tools into textual-create

    # Conflicts:
    #	tests/lint/multiqc_config.py
    mashehu committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    2d7c4e0 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    7a96212 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    eaedeb7 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    682d9b3 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    3aa383c View commit details
    Browse the repository at this point in the history
  7. fix pipeline create tests

    mirpedrol committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    d8283bb View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    241bc20 View commit details
    Browse the repository at this point in the history

Commits on Apr 5, 2024

  1. Configuration menu
    Copy the full SHA
    6f2a59b View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    24704a7 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    5add94b View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    5d9ebbd View commit details
    Browse the repository at this point in the history
  5. fix threads and messages

    mirpedrol committed Apr 5, 2024
    Configuration menu
    Copy the full SHA
    5a0aa46 View commit details
    Browse the repository at this point in the history
  6. update test snapshots

    mirpedrol committed Apr 5, 2024
    Configuration menu
    Copy the full SHA
    48d6ea1 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    01481db View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    6f7d0d1 View commit details
    Browse the repository at this point in the history

Commits on Apr 8, 2024

  1. Some tweaks to text strings

    ewels committed Apr 8, 2024
    Configuration menu
    Copy the full SHA
    33a97bb View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    c616f91 View commit details
    Browse the repository at this point in the history
  3. Merge pull request nf-core#6 from mirpedrol/textual-create-changes

    Add last changes to Textual create
    ewels authored Apr 8, 2024
    Configuration menu
    Copy the full SHA
    1ce788f View commit details
    Browse the repository at this point in the history
  4. Whitespace etc

    ewels committed Apr 8, 2024
    Configuration menu
    Copy the full SHA
    1503b12 View commit details
    Browse the repository at this point in the history

Commits on Apr 11, 2024

  1. Configuration menu
    Copy the full SHA
    0acb2e2 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    5fcedcc View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    c2381ae View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    30f6c5a View commit details
    Browse the repository at this point in the history

Commits on Apr 12, 2024

  1. Configuration menu
    Copy the full SHA
    bf14b4e View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    b1412cf View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    e3b6d44 View commit details
    Browse the repository at this point in the history
  4. update snapshots

    mirpedrol committed Apr 12, 2024
    Configuration menu
    Copy the full SHA
    7cc3757 View commit details
    Browse the repository at this point in the history

Commits on Apr 15, 2024

  1. fix providing outdir

    mirpedrol committed Apr 15, 2024
    Configuration menu
    Copy the full SHA
    0bd1807 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    9976440 View commit details
    Browse the repository at this point in the history

Commits on Apr 16, 2024

  1. Configuration menu
    Copy the full SHA
    777f68c View commit details
    Browse the repository at this point in the history

Commits on Apr 17, 2024

  1. debugging ci tests

    mashehu committed Apr 17, 2024
    Configuration menu
    Copy the full SHA
    e7d3886 View commit details
    Browse the repository at this point in the history
  2. try fixing outdir, again

    mirpedrol committed Apr 17, 2024
    Configuration menu
    Copy the full SHA
    6b83de8 View commit details
    Browse the repository at this point in the history

Commits on Apr 26, 2024

  1. Add charliecloud.registry

    nschan authored Apr 26, 2024
    Configuration menu
    Copy the full SHA
    20b824d View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    e22569d View commit details
    Browse the repository at this point in the history
  3. Update comment, add newline

    nschan authored Apr 26, 2024
    Configuration menu
    Copy the full SHA
    97bfc21 View commit details
    Browse the repository at this point in the history

Commits on May 9, 2024

  1. Configuration menu
    Copy the full SHA
    e1a12f3 View commit details
    Browse the repository at this point in the history
  2. update snapshots

    mirpedrol committed May 9, 2024
    Configuration menu
    Copy the full SHA
    dcc7757 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    8aceeb3 View commit details
    Browse the repository at this point in the history
  4. bump to 2.14.2dev

    mirpedrol committed May 9, 2024
    Configuration menu
    Copy the full SHA
    2d4aefa View commit details
    Browse the repository at this point in the history
  5. Merge pull request nf-core#2972 from mirpedrol/bump-2.14.2

    bump to 2.14.2dev
    mirpedrol authored May 9, 2024
    Configuration menu
    Copy the full SHA
    994a430 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    4354544 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    37a4bfc View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    1ae28bc View commit details
    Browse the repository at this point in the history

Commits on May 10, 2024

  1. Configuration menu
    Copy the full SHA
    9572b23 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    bc1096f View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    af584d3 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    0de5b69 View commit details
    Browse the repository at this point in the history
  5. update snapshot from gitpod

    mirpedrol committed May 10, 2024
    Configuration menu
    Copy the full SHA
    9d6838c View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    3cf57a8 View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    0bdd4dd View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    05cb3f2 View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    c3e2844 View commit details
    Browse the repository at this point in the history

Commits on May 13, 2024

  1. Merge pull request nf-core#2976 from itrujnara/fix_deps_lint_nf_schema

    Fix linting fail on nfcore_external_java_deps if nf_schema is used
    itrujnara authored May 13, 2024
    Configuration menu
    Copy the full SHA
    a157cb1 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    5e611c8 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    7c1bb8a View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    9543808 View commit details
    Browse the repository at this point in the history
  5. Apply suggestions from code review

    Co-authored-by: Matthias Hörtenhuber <[email protected]>
    mirpedrol and mashehu authored May 13, 2024
    Configuration menu
    Copy the full SHA
    940b384 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    961a17b View commit details
    Browse the repository at this point in the history
  7. update getting started link

    mashehu committed May 13, 2024
    Configuration menu
    Copy the full SHA
    25c6ff4 View commit details
    Browse the repository at this point in the history

Commits on May 14, 2024

  1. Merge pull request nf-core#2404 from ewels/textual-create

    Textual create
    mirpedrol authored May 14, 2024
    Configuration menu
    Copy the full SHA
    942ce49 View commit details
    Browse the repository at this point in the history

Commits on May 15, 2024

  1. Configuration menu
    Copy the full SHA
    c36741f View commit details
    Browse the repository at this point in the history
  2. [automated] Update CHANGELOG.md

    nf-core-bot authored and renovate[bot] committed May 15, 2024
    Configuration menu
    Copy the full SHA
    c8fc54b View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    c448406 View commit details
    Browse the repository at this point in the history
  4. update changelog

    famosab committed May 15, 2024
    Configuration menu
    Copy the full SHA
    4ca14b4 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    808692c View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    51447b2 View commit details
    Browse the repository at this point in the history

Commits on May 20, 2024

  1. Fix README.md admonition

    scwatts committed May 20, 2024
    Configuration menu
    Copy the full SHA
    515ef02 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    134d48c View commit details
    Browse the repository at this point in the history
  3. fix contributing sentence

    mirpedrol committed May 20, 2024
    Configuration menu
    Copy the full SHA
    0fa391d View commit details
    Browse the repository at this point in the history
  4. Merge pull request nf-core#2911 from ewels/docs-lift-shift

    Docs lift shift
    mirpedrol authored May 20, 2024
    Configuration menu
    Copy the full SHA
    829b340 View commit details
    Browse the repository at this point in the history
  5. Update website docs link

    ewels authored May 20, 2024
    Configuration menu
    Copy the full SHA
    a70f8a8 View commit details
    Browse the repository at this point in the history

Commits on May 21, 2024

  1. Configuration menu
    Copy the full SHA
    cfc06fe View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    db6f0d3 View commit details
    Browse the repository at this point in the history
  3. Merge pull request nf-core#2988 from mashehu/update-api-docs-script

    Update output of generation script for API docs to new structure
    mirpedrol authored May 21, 2024
    Configuration menu
    Copy the full SHA
    6fd1a40 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    1d0d691 View commit details
    Browse the repository at this point in the history
  5. Merge pull request nf-core#2990 from mirpedrol/update-bwa-mem

    Update test after updating bwa/mem module
    mirpedrol authored May 21, 2024
    Configuration menu
    Copy the full SHA
    d4b8af2 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    6a4184d View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    49896ff View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    589265e View commit details
    Browse the repository at this point in the history
  9. Merge pull request nf-core#2987 from scwatts/fix-template-readme-admo…

    …nition
    
    Fix template README.md admonition
    ewels authored May 21, 2024
    Configuration menu
    Copy the full SHA
    163c382 View commit details
    Browse the repository at this point in the history

Commits on May 22, 2024

  1. Configuration menu
    Copy the full SHA
    e6b089b View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    5fc3069 View commit details
    Browse the repository at this point in the history
  3. Merge pull request nf-core#2985 from famosab/module-template-update

    Update template according to new specification
    mirpedrol authored May 22, 2024
    Configuration menu
    Copy the full SHA
    2036bb7 View commit details
    Browse the repository at this point in the history
  4. Merge pull request nf-core#2991 from mahesh-panchal/add_noclobber

    Add no clobber and put bash options on their own line
    mahesh-panchal authored May 22, 2024
    Configuration menu
    Copy the full SHA
    fd7ca28 View commit details
    Browse the repository at this point in the history

Commits on May 23, 2024

  1. Configuration menu
    Copy the full SHA
    2220a74 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    d77af41 View commit details
    Browse the repository at this point in the history
  3. update snapshots fom gitpod

    mirpedrol committed May 23, 2024
    Configuration menu
    Copy the full SHA
    8f6c8fb View commit details
    Browse the repository at this point in the history
  4. Merge pull request nf-core#2998 from mirpedrol/textual-tests

    update minimal textual version and snapshots
    mirpedrol authored May 23, 2024
    Configuration menu
    Copy the full SHA
    4ebbbb0 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    e9740b6 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    b81e98c View commit details
    Browse the repository at this point in the history
  7. Merge pull request nf-core#2937 from nf-core/charliecloud-registry

    Add charliecloud.registry
    nschan authored May 23, 2024
    Configuration menu
    Copy the full SHA
    6d92598 View commit details
    Browse the repository at this point in the history
  8. Merge pull request nf-core#2997 from nf-core/renovate/astral-sh-ruff-…

    …pre-commit-0.x
    
    Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.5
    mirpedrol authored May 23, 2024
    Configuration menu
    Copy the full SHA
    b06712a View commit details
    Browse the repository at this point in the history

Commits on May 27, 2024

  1. Configuration menu
    Copy the full SHA
    e713637 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    ae47db3 View commit details
    Browse the repository at this point in the history
  3. add org to main.nf.test tag

    nvnieuwk committed May 27, 2024
    Configuration menu
    Copy the full SHA
    efd397d View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    a446f29 View commit details
    Browse the repository at this point in the history
  5. update changelog

    nvnieuwk committed May 27, 2024
    Configuration menu
    Copy the full SHA
    7bae122 View commit details
    Browse the repository at this point in the history
  6. ruff!

    nvnieuwk committed May 27, 2024
    Configuration menu
    Copy the full SHA
    a4ecb70 View commit details
    Browse the repository at this point in the history

Commits on May 28, 2024

  1. Merge pull request nf-core#3003 from mirpedrol/fix-recreating-config

    return directory if base_dir is the root directory
    mirpedrol authored May 28, 2024
    Configuration menu
    Copy the full SHA
    2f0f4a0 View commit details
    Browse the repository at this point in the history
  2. Merge pull request nf-core#3005 from nvnieuwk/add-org-to-tag

    Add organization to `main.nf.test` tag instead of using `nfcore`
    nvnieuwk authored May 28, 2024
    Configuration menu
    Copy the full SHA
    d0b7594 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    6d9feb3 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    f94ec87 View commit details
    Browse the repository at this point in the history

Commits on May 29, 2024

  1. Configuration menu
    Copy the full SHA
    b02c993 View commit details
    Browse the repository at this point in the history
  2. use pydantic validation context on module initialization. use global …

    …variable for pipeline type
    mirpedrol committed May 29, 2024
    Configuration menu
    Copy the full SHA
    60b79b1 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    0186535 View commit details
    Browse the repository at this point in the history
  4. use union for typing

    mirpedrol committed May 29, 2024
    Configuration menu
    Copy the full SHA
    6275553 View commit details
    Browse the repository at this point in the history

Commits on May 30, 2024

  1. Merge pull request nf-core#2978 from mirpedrol/conditional-linting

    Template: Lint pipelines with the nf-core template version and post comment if it is outdated
    mirpedrol authored May 30, 2024
    Configuration menu
    Copy the full SHA
    26fb9e5 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    2b724e0 View commit details
    Browse the repository at this point in the history

Commits on May 31, 2024

  1. Merge pull request nf-core#3008 from mirpedrol/pipeline-name-validation

    Create: allow more special characters on the pipeline name for non-nf-core pipelines
    mirpedrol authored May 31, 2024
    Configuration menu
    Copy the full SHA
    d7ce41b View commit details
    Browse the repository at this point in the history
  2. README - absolute image paths

    Make the logo render on PyPI
    ewels authored May 31, 2024
    Configuration menu
    Copy the full SHA
    02017aa View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    0892642 View commit details
    Browse the repository at this point in the history
  4. Conda module linting: Include package name in log file

    Tried to do this with GitHub Copilot Workspaces but it failed 😅 
    
    As I was looking at the code anyway I could see the fix so figured I would put it manually.
    
    Closes nf-core#3009
    
    Untested, done in web browser only.
    ewels authored May 31, 2024
    Configuration menu
    Copy the full SHA
    b96f56b View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    93acb91 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    d4a9183 View commit details
    Browse the repository at this point in the history

Commits on Jun 1, 2024

  1. Merge pull request nf-core#3015 from nf-core/renovate/astral-sh-ruff-…

    …pre-commit-0.x
    
    Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.7
    mashehu authored Jun 1, 2024
    Configuration menu
    Copy the full SHA
    6d7e00d View commit details
    Browse the repository at this point in the history

Commits on Jun 3, 2024

  1. Configuration menu
    Copy the full SHA
    e9c596d View commit details
    Browse the repository at this point in the history
  2. Merge pull request nf-core#3013 from nf-core/readme-absolute-images

    README - absolute image paths
    mirpedrol authored Jun 3, 2024
    Configuration menu
    Copy the full SHA
    fd34107 View commit details
    Browse the repository at this point in the history
  3. update changelog

    mirpedrol committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    847a376 View commit details
    Browse the repository at this point in the history
  4. Merge pull request nf-core#3014 from nf-core/lint-conda-name-in-log

    Conda module linting: Include package name in log file
    mirpedrol authored Jun 3, 2024
    Configuration menu
    Copy the full SHA
    14f0da4 View commit details
    Browse the repository at this point in the history

Commits on Jun 5, 2024

  1. Configuration menu
    Copy the full SHA
    005972e View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    ee5a22b View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    feb5685 View commit details
    Browse the repository at this point in the history

Commits on Jun 9, 2024

  1. Configuration menu
    Copy the full SHA
    8ee2040 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    a63a653 View commit details
    Browse the repository at this point in the history

Commits on Jun 12, 2024

  1. Configuration menu
    Copy the full SHA
    05f60b4 View commit details
    Browse the repository at this point in the history

Commits on Jun 15, 2024

  1. Configuration menu
    Copy the full SHA
    90f7e34 View commit details
    Browse the repository at this point in the history
  2. [automated] Update CHANGELOG.md

    nf-core-bot authored and renovate[bot] committed Jun 15, 2024
    Configuration menu
    Copy the full SHA
    6f444c9 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    a15a6f0 View commit details
    Browse the repository at this point in the history
  4. Configuration menu
    Copy the full SHA
    4157a20 View commit details
    Browse the repository at this point in the history