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Remove release announcement from non nf-core pipelines #3024
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run create command from the App, mv nf_core/create.py to nf_core/pipe…
…lines/create/create.py
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Commits on Oct 3, 2023
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add new screen to create a github repo and push the new pipeline (not…
… working from the app)
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Raw strings for nf-core ascii artwork
Avoids warnings about invalid escape sequences
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Merge branch 'dev' of github.com:nf-core/tools into textual-create
# Conflicts: # tests/lint/multiqc_config.py
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Merge pull request nf-core#6 from mirpedrol/textual-create-changes
Add last changes to Textual create
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Merge pull request nf-core#2972 from mirpedrol/bump-2.14.2
bump to 2.14.2dev
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Merge pull request nf-core#2974 from nf-core/renovate/astral-sh-ruff-…
…pre-commit-0.x
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Merge pull request nf-core#2976 from itrujnara/fix_deps_lint_nf_schema
Fix linting fail on nfcore_external_java_deps if nf_schema is used
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Apply suggestions from code review
Co-authored-by: Matthias Hörtenhuber <[email protected]>
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Merge pull request nf-core#2404 from ewels/textual-create
Textual create
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Merge pull request nf-core#2911 from ewels/docs-lift-shift
Docs lift shift
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Merge pull request nf-core#2988 from mashehu/update-api-docs-script
Update output of generation script for API docs to new structure
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Merge pull request nf-core#2990 from mirpedrol/update-bwa-mem
Update test after updating bwa/mem module
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Merge pull request nf-core#2987 from scwatts/fix-template-readme-admo…
…nition Fix template README.md admonition
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Commits on May 22, 2024
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Merge pull request nf-core#2985 from famosab/module-template-update
Update template according to new specification
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Merge pull request nf-core#2991 from mahesh-panchal/add_noclobber
Add no clobber and put bash options on their own line
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Commits on May 23, 2024
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Merge pull request nf-core#2998 from mirpedrol/textual-tests
update minimal textual version and snapshots
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Merge pull request nf-core#2937 from nf-core/charliecloud-registry
Add charliecloud.registry
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Merge pull request nf-core#2997 from nf-core/renovate/astral-sh-ruff-…
…pre-commit-0.x Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.5
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Commits on May 27, 2024
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Merge pull request nf-core#3003 from mirpedrol/fix-recreating-config
return directory if base_dir is the root directory
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Merge pull request nf-core#3005 from nvnieuwk/add-org-to-tag
Add organization to `main.nf.test` tag instead of using `nfcore`
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Merge pull request nf-core#3006 from nf-core/renovate/astral-sh-ruff-…
…pre-commit-0.x
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use pydantic validation context on module initialization. use global …
…variable for pipeline type
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Merge pull request nf-core#2978 from mirpedrol/conditional-linting
Template: Lint pipelines with the nf-core template version and post comment if it is outdated
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Merge pull request nf-core#3008 from mirpedrol/pipeline-name-validation
Create: allow more special characters on the pipeline name for non-nf-core pipelines
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Conda module linting: Include package name in log file
Tried to do this with GitHub Copilot Workspaces but it failed 😅 As I was looking at the code anyway I could see the fix so figured I would put it manually. Closes nf-core#3009 Untested, done in web browser only.
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Merge pull request nf-core#3015 from nf-core/renovate/astral-sh-ruff-…
…pre-commit-0.x Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.7
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Commits on Jun 3, 2024
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Merge pull request nf-core#3013 from nf-core/readme-absolute-images
README - absolute image paths
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Merge pull request nf-core#3014 from nf-core/lint-conda-name-in-log
Conda module linting: Include package name in log file
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Commits on Jun 5, 2024
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Merge pull request nf-core#3017 from nf-core/renovate/astral-sh-ruff-…
…pre-commit-0.x
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Commits on Jun 9, 2024
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Commits on Jun 12, 2024
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Commits on Jun 15, 2024
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Merge pull request nf-core#3022 from nf-core/renovate/astral-sh-ruff-…
…pre-commit-0.x
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