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I really wanted to avoid using path-filter and having the whole separate step logic for the linting.
I think we could offload the changed files to pre-commit, and create pre-commit hooks for nf-core/tools. I think it would be pretty slick for pipelines as well(I know I don't run nf-core lint often enough personally)
The only issue I had was the way pre-commit passes files. It will pass nf-core modules lint modules/nf-core/bowtie/align/main.nf modules/nf-core/bowtie/build/main.nf modules/nf-core/fastqc/main.nf ... which currently doesn't work.
The text was updated successfully, but these errors were encountered:
Description of feature
I was working on nf-core/modules#6286 last week.
I really wanted to avoid using path-filter and having the whole separate step logic for the linting.
I think we could offload the changed files to pre-commit, and create pre-commit hooks for nf-core/tools. I think it would be pretty slick for pipelines as well(I know I don't run nf-core lint often enough personally)
The only issue I had was the way pre-commit passes files. It will pass
nf-core modules lint modules/nf-core/bowtie/align/main.nf modules/nf-core/bowtie/build/main.nf modules/nf-core/fastqc/main.nf ...
which currently doesn't work.The text was updated successfully, but these errors were encountered: