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bump ALL gatk4 modules #124

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bump ALL gatk4 modules

bump ALL gatk4 modules #124

Triggered via pull request November 7, 2024 20:57
@matthdsmmatthdsm
synchronize #6917
matthdsm:bump/gatk
Status Failure
Total duration 2m 21s
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126 errors
build (docker, modules/nf-core/gatk4/addorreplacereadgroups/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/postprocessgermlinecnvcalls/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/applyvqsr/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/bedtointervallist/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/baserecalibrator/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/annotateintervals/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/applybqsr/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/calibratedragstrmodel/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/combinegvcfs/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/indexfeaturefile/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/filtermutectcalls/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/asereadcounter/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/genomicsdbimport/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/germlinecnvcaller/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/leftalignandtrimvariants/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/haplotypecaller/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/estimatelibrarycomplexity/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/determinegermlinecontigploidy/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/getpileupsummaries/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/preprocessintervals/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/filterintervals/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/denoisereadcounts/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/intervallisttools/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/collectsvevidence/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/genotypegvcfs/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/printsvevidence/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/splitintervals/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/splitncigarreads/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/calculatecontamination/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/shiftfasta/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/mergebamalignment/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/createsomaticpanelofnormals/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/mergemutectstats/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/mergevcfs/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/composestrtablefile/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/filtervarianttranches/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/createreadcountpanelofnormals/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/samtofastq/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/printreads/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/svcluster/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/sitedepthtobaf/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/condensedepthevidence/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/collectreadcounts/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/svannotate/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/createsequencedictionary/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/markduplicates/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/mutect2/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/learnreadorientationmodel/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/intervallisttobed/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/gatherbqsrreports/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/gatherpileupsummaries/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/splitcram/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/reblockgvcf/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/revertsam/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/selectvariants/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/fastqtosam/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/variantstotable/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4spark/markduplicates/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4spark/applybqsr/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/baserecalibrator/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4spark/baserecalibrator/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/bedtointervallist/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/determinegermlinecontigploidy/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/variantrecalibrator/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/combinegvcfs/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/condensedepthevidence/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/createreadcountpanelofnormals/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/composestrtablefile/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/createsomaticpanelofnormals/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/estimatelibrarycomplexity/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/filtermutectcalls/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/gatherpileupsummaries/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/cnnscorevariants/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/intervallisttools/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/filtervarianttranches/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/collectreadcounts/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/getpileupsummaries/environment.yml)
Process completed with exit code 1.
build (docker, modules/nf-core/gatk4/variantfiltration/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/genomicsdbimport/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/collectsvevidence/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/fastqtosam/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/leftalignandtrimvariants/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/gatherbqsrreports/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/calculatecontamination/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/calibratedragstrmodel/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/markduplicates/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/postprocessgermlinecnvcalls/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/mergebamalignment/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/genotypegvcfs/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/addorreplacereadgroups/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/filterintervals/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/reblockgvcf/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/denoisereadcounts/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/learnreadorientationmodel/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/splitintervals/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/sitedepthtobaf/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/mergemutectstats/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/germlinecnvcaller/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/preprocessintervals/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/printsvevidence/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/shiftfasta/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/mutect2/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/selectvariants/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/mergevcfs/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/revertsam/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/haplotypecaller/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/indexfeaturefile/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/annotateintervals/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/printreads/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/splitncigarreads/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4spark/markduplicates/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/variantfiltration/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/samtofastq/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/applyvqsr/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/splitcram/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4spark/baserecalibrator/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4spark/applybqsr/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/applybqsr/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/variantstotable/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/cnnscorevariants/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/variantrecalibrator/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/svannotate/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/asereadcounter/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/svcluster/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/intervallisttobed/environment.yml)
Process completed with exit code 1.
build (singularity, modules/nf-core/gatk4/createsequencedictionary/environment.yml)
Process completed with exit code 1.