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29 Open 6 Closed
29 Open 6 Closed
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Issues list

Description of the result file
#35 opened Oct 31, 2024 by deadblackhole
Can MetaPop be used to calculate the gene-wise Fst?
#34 opened Aug 6, 2024 by 473021677
ZeroDivisionError: division by zero
#33 opened May 18, 2024 by hdflorezr
Infinite pN/pS values
#31 opened Oct 18, 2023 by azk001
There was an error in a '. bam' file while running Linking SNPs, but the other files are fine
#29 opened Oct 10, 2023 by Lilingyuns
Error while Calculating and Visualizing Microdiversity using MetaPop
#28 opened Sep 26, 2023 by 1endless
error in breadth_and_depth_output function from metapop_filter.py
#26 opened Jun 1, 2023 by beacamara
1
1. Suitable for the analysis of ssDNA viral population? 2. FileNotFoundError: 'MetaPop/09.Linked_SNPs/range_131_reads.txt'
#24 opened Mar 10, 2023 by ChenTianYi99
4
Macrodiversity Error: NAs produced by integer overflow
#23 opened Feb 8, 2023 by DanielSprockett
1
Error while Refining SNVs into SNPs step
#22 opened Dec 3, 2022 by ShailNair
3
multiprocessing bug only for python 3.8 or later
#20 opened Nov 19, 2022 by jianshu93
FileNotFoundError at the FST step
#19 opened Nov 18, 2022 by MalickNdiye
4
Help: "the file did not appear to be a SAM or BAM format file"
#18 opened Oct 18, 2022 by Danrui-Wang
4
Help: difference between local and global SNP calls
#17 opened Sep 19, 2022 by hdore
1
Output docs + pN/pS ratio
#16 opened Aug 3, 2022 by PegahDan
1
R figure issue
#15 opened Jun 28, 2022 by ChaoLab
1
Is it required to filter the bam files?
#14 opened May 27, 2022 by ChaoLab
4
06.SNP_counts step running for an abnormally long time
#13 opened Mar 14, 2022 by ChaoLab
34
Can metapop increase its mapping criteria to solve strain-level community marcro-/micro-diversity?
#12 opened Mar 10, 2022 by ChaoLab
1
ValueError: invalid literal for int() with base 10
#11 opened Feb 5, 2022 by liupfskygre
4
MetaPop can not be used on Cyverse
#10 opened Nov 13, 2021 by ZhengXiaoxuan11542
3
Initial conda step gets stuck on solving the environment unless you install them individually
#9 opened May 19, 2021 by michaelamann
Files issue
#8 opened Apr 23, 2021 by ebustos128
2
Autism dataset running example
#7 opened Feb 19, 2021 by hh1985
1
Error in fixation index step
#6 opened Feb 11, 2021 by susheelbhanu
1
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