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Update to 4.2.8 & migrate internal bio-formats #20

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743e0f4
Bump centrosome
bethac07 Jul 23, 2024
84e6ad7
Bump core
gnodar01 Jul 23, 2024
8d6ad47
Fix 3D display in MeasureImageOverlap
bethac07 Jul 23, 2024
a700ec0
fix measurment specification
bethac07 Jul 23, 2024
0473eb3
fix bad tests
bethac07 Jul 25, 2024
ce762ae
scale value
bethac07 Jul 23, 2024
aaa863d
remove tuple wrapping of labels
bethac07 Jul 25, 2024
2547a5e
Update runimagejmacro.py
bethac07 Jul 23, 2024
4254cd8
tell workers to pull the dictionary from disk
bethac07 Jul 25, 2024
a4f3aa6
check for case of mixed 0s and nans
bethac07 Jul 25, 2024
7563623
Update threshold.py
bethac07 Jul 25, 2024
04c6d39
Bump to 4.2.7
gnodar01 Jul 26, 2024
88614d9
[CI fix] pin exact java version to match distribution
gnodar01 Jul 29, 2024
c57cdfc
[CI fix] Adjust macos version and fix java specifier
gnodar01 Jul 29, 2024
7d2831e
[CI fix] place working dir for distribution in correct step
gnodar01 Jul 29, 2024
8509434
fix label assignment when different objects are neighbors
bethac07 Aug 5, 2024
bd02326
Pin and bump versions
gnodar01 Aug 26, 2024
b39416c
Move to non-broken pytest
gnodar01 Aug 26, 2024
5fae3cd
Bump to 4.2.8
gnodar01 Sep 13, 2024
0d12506
[build] Pin markupsafe for jinja
gnodar01 Sep 17, 2024
29fdc51
[CI] allow manual trigger
gnodar01 Sep 26, 2024
08d8ec7
[CI] Switch to macos 13
gnodar01 Sep 26, 2024
e44f8e8
Make pep 517 compat
gnodar01 Sep 26, 2024
90e8f2e
Add tmate
gnodar01 Sep 26, 2024
893f9c2
Test modified java deps
DavidStirling Oct 21, 2024
8fbd162
Disabling PEP 517 no longer supported
DavidStirling Oct 21, 2024
e7bd732
Do bf after core
DavidStirling Oct 21, 2024
f873b4a
Override bf manually
DavidStirling Oct 21, 2024
3f5ad5f
Bump javabridge
DavidStirling Oct 21, 2024
3f2cf4a
Force prokaryote too
DavidStirling Oct 21, 2024
b00b65a
Force include core
DavidStirling Oct 21, 2024
66f1318
Use tar for macos app
DavidStirling Oct 21, 2024
ec5046e
Use wheel for core
DavidStirling Oct 21, 2024
7dfbd10
No editable installs
DavidStirling Oct 21, 2024
17781ed
Disable auto update checker and fix version processor
DavidStirling Oct 22, 2024
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Make pep 517 compat
gnodar01 authored and DavidStirling committed Oct 21, 2024
commit e44f8e86c8bd43871a86d77a731f855c1db33378
20 changes: 3 additions & 17 deletions pyproject.toml
Original file line number Diff line number Diff line change
@@ -1,17 +1,3 @@
[tool.black]
exclude = '''
(
/(
\.eggs
| \.git
| \.hg
| \.mypy_cache
| \.tox
| \.venv
| _build
| build
| dist
)/
)
'''
target_version = ['py38']
[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"