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1. glencoesoftware/NGFF-Converter glencoesoftware/NGFF-Converter Public

   NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF

   Java 24 7

2. CellProfiler/CellProfiler CellProfiler/CellProfiler Public

   An open-source application for biological image analysis

   Python 963 389

3. CellProfiler/CellProfiler-Analyst CellProfiler/CellProfiler-Analyst Public

   Open-source software for exploring and analyzing large, high-dimensional image-derived data.

   Python 150 73

4. CellProfiler/core CellProfiler/core Public

   Core classes and components used by CellProfiler

   Python 6 24

5. ImQuick ImQuick Public

   A lightweight scientific image viewer

   Python 5 1

6. QuantiFish QuantiFish Public

   Zebrafish embryo fluorescence quantification

   Python 4 1