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14 Open 21 Closed
14 Open 21 Closed
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Issues list

Cannot release stitch
#64 opened Aug 22, 2024 by nh13
Adjust MAPQ based on difference between best and suboptimal alignment scores
#62 opened Oct 3, 2023 by jdidion
@jdidion
Add tag with pre-alignment score to unaligned reads
#58 opened Sep 19, 2023 by jdidion
2
Determine best default values for jump_score_* parameters
#57 opened Sep 19, 2023 by jdidion
Ability to align against a multi-contig construct enhancement New feature or request
#56 opened Sep 19, 2023 by jdidion
4
Additional PrimaryPickingStrategys enhancement New feature or request
#55 opened Sep 19, 2023 by jdidion
Rename Alignment to AlignmentChain
#53 opened Sep 19, 2023 by nh13
Add release workflow ci Task related to continuous integration
#52 opened Sep 18, 2023 by jdidion
@jdidion
2
Used a shared reference for target hashes enhancement New feature or request
#33 opened Sep 13, 2023 by jdidion
1
Convert aligned records to BED or other suitable format for viewing in IGV
#23 opened Jun 9, 2023 by nh13
Improve traceback memory layout
#20 opened Jun 9, 2023 by nh13
Add an option to align to each contig separately and jointly to pick the highest score
#16 opened Jun 7, 2023 by nh13
Require the alignment to start and end on a specific contig
#15 opened Jun 7, 2023 by nh13
Tool to "invert" the alignments
#5 opened May 31, 2023 by nh13
ProTip! no:milestone will show everything without a milestone.