Added baseURL and multiple wf_notebook functionalities #8
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| on: | |
| push: | |
| paths: | |
| - common/docker/README_common.md | |
| - common/docker/README_subrepo.md | |
| - common/docker/README_python.md | |
| workflow_dispatch: | |
| name: Docker README | |
| jobs: | |
| sync: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: bioexcel/biobb_workflows | |
| path: ./ | |
| - name: Copy README files | |
| run: | | |
| cp common/docker/README_subrepo.md biobb_wf_amber_abc_setup/docker/README.md | |
| cp common/docker/README_subrepo.md biobb_wf_amber_md_setup/docker/README.md | |
| cp common/docker/README_subrepo.md biobb_wf_amber_md_setup_lig/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_cmip/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_dna_helparms/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_flexdyn/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_flexserv/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_godmd/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_ligand_parameterization/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_md_setup/docker/README.md | |
| cp common/docker/README_python.md biobb_wf_md_setup_mutations/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_pmx_tutorial/docker/README.md | |
| cp common/docker/README_python.md biobb_wf_protein_md_analysis/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_protein-complex_md_setup/docker/README.md | |
| cp common/docker/README_common.md biobb_wf_structure_checking/docker/README.md | |
| cp common/docker/README_subrepo.md biobb_wf_virtual-screening_fpocket/docker/README.md | |
| - name: Replace placeholders in README | |
| run: | | |
| sed -i "s/<repository>/biobb_wf_amber/g" biobb_wf_amber_abc_setup/docker/README.md | |
| sed -i "s/<subrepository>/abc_setup/g" biobb_wf_amber_abc_setup/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_amber/g" biobb_wf_amber_md_setup/docker/README.md | |
| sed -i "s/<subrepository>/md_setup/g" biobb_wf_amber_md_setup/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_amber/g" biobb_wf_amber_md_setup_lig/docker/README.md | |
| sed -i "s/<subrepository>/md_setup_lig/g" biobb_wf_amber_md_setup_lig/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_cmip/g" biobb_wf_cmip/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_dna_helparms/g" biobb_wf_dna_helparms/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_flexdyn/g" biobb_wf_flexdyn/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_flexserv/g" biobb_wf_flexserv/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_godmd/g" biobb_wf_godmd/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_ligand_parameterization/g" biobb_wf_ligand_parameterization/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_md_setup/g" biobb_wf_md_setup/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_md_setup_mutations/g" biobb_wf_md_setup_mutations/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_pmx_tutorial/g" biobb_wf_pmx_tutorial/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_protein_md_analysis/g" biobb_wf_protein_md_analysis/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_protein-complex_md_setup/g" biobb_wf_protein-complex_md_setup/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_structure_checking/g" biobb_wf_structure_checking/docker/README.md | |
| sed -i "s/<repository>/biobb_wf_virtual-screening/g" biobb_wf_virtual-screening_fpocket/docker/README.md | |
| sed -i "s/<subrepository>/fpocket/g" biobb_wf_virtual-screening_fpocket/docker/README.md | |
| - name: Commit and push changes | |
| run: | | |
| git pull | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| git add */docker/README.md && git commit -m "Updated docker README" && git push |