BioExcel
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gromacs-2022-cp2k-tutorial
gromacs-2022-cp2k-tutorial PublicSample inputs and tutorial for GROMACS-2022/CP2K QMMM interface
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cp2K_qmmm_tutorials_for_biological_simulations
cp2K_qmmm_tutorials_for_biological_simulations PublicSeveral QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.
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Repositories
- biobb_wf_structure_checking Public
This tutorial aims to illustrate the process of checking a molecular structure before using it as an input for a Molecular Dynamics simulation using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_structure_checking’s past year of commit activity - biobb_wf_virtual-screening Public
This tutorials aim to illustrate the process of protein-ligand docking, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_virtual-screening’s past year of commit activity - biobb_wf_pmx_tutorial Public
This tutorial aims to illustrate how to compute a fast-growth mutation free energy calculation, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_pmx_tutorial’s past year of commit activity - biobb_gromacs Public
bioexcel/biobb_gromacs’s past year of commit activity - biobb_mem Public
bioexcel/biobb_mem’s past year of commit activity - biobb_wf_protein-complex_md_setup Public
This tutorial aims to illustrate the process of setting up a simulation system containing a protein in complex with a ligand, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_protein-complex_md_setup’s past year of commit activity - biobb_wf_md_setup Public
This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_md_setup’s past year of commit activity - biobb_wf_godmd Public
This tutorial aims to illustrate the process of computing a conformational transition between two known structural conformations of a protein, step by step, using the BioExcel Building Blocks library (biobb).
bioexcel/biobb_wf_godmd’s past year of commit activity
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