docker_readme.yaml

on:
  push:
    paths:
      - common/docker/README_common.md
      - common/docker/README_subrepo.md
      - common/docker/README_python.md
  workflow_dispatch:

name: Docker README
jobs:
  sync:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout repo
        uses: actions/checkout@v2
        with:
          repository: bioexcel/biobb_workflows
          path: ./
      - name: Copy README files
        run: |
          cp common/docker/README_subrepo.md biobb_wf_amber_abc_setup/docker/README.md
          cp common/docker/README_subrepo.md biobb_wf_amber_md_setup/docker/README.md
          cp common/docker/README_subrepo.md biobb_wf_amber_md_setup_lig/docker/README.md
          cp common/docker/README_common.md biobb_wf_cmip/docker/README.md
          cp common/docker/README_common.md biobb_wf_dna_helparms/docker/README.md
          cp common/docker/README_common.md biobb_wf_flexdyn/docker/README.md
          cp common/docker/README_common.md biobb_wf_flexserv/docker/README.md
          cp common/docker/README_common.md biobb_wf_godmd/docker/README.md
          cp common/docker/README_common.md biobb_wf_ligand_parameterization/docker/README.md
          cp common/docker/README_common.md biobb_wf_md_setup/docker/README.md
          cp common/docker/README_python.md biobb_wf_md_setup_mutations/docker/README.md
          cp common/docker/README_common.md biobb_wf_pmx_tutorial/docker/README.md
          cp common/docker/README_python.md biobb_wf_protein_md_analysis/docker/README.md
          cp common/docker/README_common.md biobb_wf_protein-complex_md_setup/docker/README.md
          cp common/docker/README_common.md biobb_wf_structure_checking/docker/README.md
          cp common/docker/README_subrepo.md biobb_wf_virtual-screening_fpocket/docker/README.md
      - name: Replace placeholders in README
        run: |
          sed -i "s/<repository>/biobb_wf_amber/g" biobb_wf_amber_abc_setup/docker/README.md
          sed -i "s/<subrepository>/abc_setup/g" biobb_wf_amber_abc_setup/docker/README.md
          sed -i "s/<repository>/biobb_wf_amber/g" biobb_wf_amber_md_setup/docker/README.md
          sed -i "s/<subrepository>/md_setup/g" biobb_wf_amber_md_setup/docker/README.md
          sed -i "s/<repository>/biobb_wf_amber/g" biobb_wf_amber_md_setup_lig/docker/README.md
          sed -i "s/<subrepository>/md_setup_lig/g" biobb_wf_amber_md_setup_lig/docker/README.md
          sed -i "s/<repository>/biobb_wf_cmip/g" biobb_wf_cmip/docker/README.md
          sed -i "s/<repository>/biobb_wf_dna_helparms/g" biobb_wf_dna_helparms/docker/README.md
          sed -i "s/<repository>/biobb_wf_flexdyn/g" biobb_wf_flexdyn/docker/README.md
          sed -i "s/<repository>/biobb_wf_flexserv/g" biobb_wf_flexserv/docker/README.md
          sed -i "s/<repository>/biobb_wf_godmd/g" biobb_wf_godmd/docker/README.md
          sed -i "s/<repository>/biobb_wf_ligand_parameterization/g" biobb_wf_ligand_parameterization/docker/README.md
          sed -i "s/<repository>/biobb_wf_md_setup/g" biobb_wf_md_setup/docker/README.md
          sed -i "s/<repository>/biobb_wf_md_setup_mutations/g" biobb_wf_md_setup_mutations/docker/README.md
          sed -i "s/<repository>/biobb_wf_pmx_tutorial/g" biobb_wf_pmx_tutorial/docker/README.md
          sed -i "s/<repository>/biobb_wf_protein_md_analysis/g" biobb_wf_protein_md_analysis/docker/README.md
          sed -i "s/<repository>/biobb_wf_protein-complex_md_setup/g" biobb_wf_protein-complex_md_setup/docker/README.md
          sed -i "s/<repository>/biobb_wf_structure_checking/g" biobb_wf_structure_checking/docker/README.md
          sed -i "s/<repository>/biobb_wf_virtual-screening/g" biobb_wf_virtual-screening_fpocket/docker/README.md
          sed -i "s/<subrepository>/fpocket/g" biobb_wf_virtual-screening_fpocket/docker/README.md
      - name: Commit and push changes
        run: |
          git pull
          git config --global user.name 'github-actions[bot]'
          git config --global user.email 'github-actions[bot]@users.noreply.github.com'
          git add */docker/README.md && git commit -m "Updated docker README" && git push