Releases: SACGF/cdot
Releases · SACGF/cdot
data_v0.2.27
Add protein for Ensembl - so it can now do c_to_p
RefSeq - add RS_2024_08 - GRCh38 and T2T-CHM13v2
v0.2.26
Bumped version to 0.2.26 to catch up with data release. Only new client functionality is #81 'data_release' helper functions
All other changes in this release were for data (and contained in data_v0.2.26)
Added
- #81 New 'data_release' code eg 'get_latest_combo_file_urls' that looks on GitHub to find latest data
- New GFFs: RefSeq RS_2023_10, Ensembl 111, 112
- #79 - RefSeq MT transcripts
- #66 - We now store 'Note' field (thanks holtgrewe for suggestion)
- Added requirements.txt for 'generate_transcript_data' sections
- client / JSON data schema version compatability check
Changed
- #56 - Fix occasional UTA duplicated exons
- #57 - Correctly handle retrieving genomic position and dealing w/indels in GFF (thanks ltnetcase for reporting)
- #60 - Fix for missing protein IDs due to Genbank / GenBank (thanks holtgrewe)
- #64 - Split code/data versions. json.gz are now labelled according to data schema version (thanks holtgrewe)
- Renamed 'CHM13v2.0' to 'T2T-CHM13v2.0' so it could work with biocommons bioutils
- #72 - Correctly handle ncRNA_gene genes (thanks holtgrewe for reporting)
- #73 - HGNC ID was missing for some chrMT genes in Ensembl
data_v0.2.26
Ensembl 112, RefSeq MT transcripts
data_v0.2.25
Correctly read gene symbol from non-standard genes
data_v0.2.24
- Fixed issue #72 - RNA gene symbols missing for ENSEMBL
data_v0.2.23
- Added Ensembl 111
data_v0.2.22
From now on code/data tags/versions are separate, see #64
- New GFFs: RefSeq RS_2023_10, Ensembl VEP110
- #56 - Fix occasional UTA duplicated exons
- #57 - Correctly handle retrieving genomic position and dealing w/indels in GFF (thanks ltnetcase for reporting)
- #60 - Fix for missing protein IDs due to Genbank / GenBank (thanks holtgrewe)
- #64 - Split code/data versions. json.gz are now labelled according to data schema version (thanks holtgrewe)
- #66 - We now store 'Note' field (thanks holtgrewe for suggestion)
- Renamed 'CHM13v2.0' to 'T2T-CHM13v2.0' so it could work with biocommons bioutils