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@davmlaw davmlaw released this 15 Aug 04:56
· 30 commits to main since this release
v0.2.26
ab9a69c

Bumped version to 0.2.26 to catch up with data release. Only new client functionality is #81 'data_release' helper functions

All other changes in this release were for data (and contained in data_v0.2.26)

Added

  • #81 New 'data_release' code eg 'get_latest_combo_file_urls' that looks on GitHub to find latest data
  • New GFFs: RefSeq RS_2023_10, Ensembl 111, 112
  • #79 - RefSeq MT transcripts
  • #66 - We now store 'Note' field (thanks holtgrewe for suggestion)
  • Added requirements.txt for 'generate_transcript_data' sections
  • client / JSON data schema version compatability check

Changed

  • #56 - Fix occasional UTA duplicated exons
  • #57 - Correctly handle retrieving genomic position and dealing w/indels in GFF (thanks ltnetcase for reporting)
  • #60 - Fix for missing protein IDs due to Genbank / GenBank (thanks holtgrewe)
  • #64 - Split code/data versions. json.gz are now labelled according to data schema version (thanks holtgrewe)
  • Renamed 'CHM13v2.0' to 'T2T-CHM13v2.0' so it could work with biocommons bioutils
  • #72 - Correctly handle ncRNA_gene genes (thanks holtgrewe for reporting)
  • #73 - HGNC ID was missing for some chrMT genes in Ensembl
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