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Releases: SACGF/cdot

v0.2.17

08 May 09:11
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No code changes in loader library, just data generation. Deleted 0.2.16 as that data had contig issue #43

  • #42 - Add Ensembl T2T release
  • #43 - Fix chrom/contig conversion in JSON data

v0.2.14

21 Mar 06:26
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[0.2.14] - 2023-03-21

Added

  • #39 - Fasta file SeqFetcher implementation
  • Add Ensembl 109 GTF

Changed

  • #38 - Differing implementation of get_tx_for_region to hgvs one (reported by Manuel Holtgrewe)
  • #35 - Tags (ie MANE Select / RefSeq select etc) should be genome build specific
  • #34 - Stick to PyHGVS conventions, throw ValueError: transcript is required on missing transcript

v0.2.12

14 Feb 00:43
9ee3424
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2022-12-08

Added

  • #30 - We now store "tag" attributes (eg "MANE Select", "RefSeq Select")
  • Switch to using Ensembl GFF3 (so we can get tags out)
  • Add Ensembl 108 GFF3

Changed

  • Fix for #25 - GeneInfo currently fails for some records
  • Fix for #27 - Change URL for missing RefSeq GFFs