Refine > Optimize Transitions dialog #2572
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This change adds a "Refine > Optimize Transitions" menu item which brings you up a form which shows you a calibration curve and picks the set of transitions that improves either the LLOQ or the LOD:
This form shows you the calibration curve for the currently selected peptide, but you can also use the "Optimize Entire Document" button to optimize all of the peptides: