Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Refine > Optimize Transitions dialog #2572

Open
wants to merge 80 commits into
base: master
Choose a base branch
from

Commits on Apr 11, 2022

  1. Bilinear limit of quantification

    Nicholas Shulman committed Apr 11, 2022
    Configuration menu
    Copy the full SHA
    3962dde View commit details
    Browse the repository at this point in the history

Commits on Apr 25, 2022

  1. ComputeLod

    Nicholas Shulman committed Apr 25, 2022
    Configuration menu
    Copy the full SHA
    dbf8f3b View commit details
    Browse the repository at this point in the history

Commits on Apr 26, 2022

  1. ComputeBootstrappedLoq

    Nicholas Shulman committed Apr 26, 2022
    Configuration menu
    Copy the full SHA
    bf59383 View commit details
    Browse the repository at this point in the history

Commits on May 25, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed May 25, 2022
    Configuration menu
    Copy the full SHA
    f921b21 View commit details
    Browse the repository at this point in the history

Commits on May 26, 2022

  1. BilinearCurveFitter

    Nicholas Shulman committed May 26, 2022
    Configuration menu
    Copy the full SHA
    17526a2 View commit details
    Browse the repository at this point in the history

Commits on May 28, 2022

  1. OptimizeTransitions

    Nicholas Shulman committed May 28, 2022
    Configuration menu
    Copy the full SHA
    dfc2504 View commit details
    Browse the repository at this point in the history

Commits on May 30, 2022

  1. OptimizeTransitionsDlg

    Nicholas Shulman committed May 30, 2022
    Configuration menu
    Copy the full SHA
    2ec200d View commit details
    Browse the repository at this point in the history
  2. Reconsider non quantitative transitions.

    Nicholas Shulman committed May 30, 2022
    Configuration menu
    Copy the full SHA
    03fc065 View commit details
    Browse the repository at this point in the history

Commits on May 31, 2022

  1. Non modal dialog.

    Nicholas Shulman committed May 31, 2022
    Configuration menu
    Copy the full SHA
    7fa618b View commit details
    Browse the repository at this point in the history

Commits on Jun 3, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Jun 3, 2022
    Configuration menu
    Copy the full SHA
    dc0289b View commit details
    Browse the repository at this point in the history

Commits on Jul 21, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Jul 21, 2022
    Configuration menu
    Copy the full SHA
    f825bfd View commit details
    Browse the repository at this point in the history

Commits on Aug 3, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Aug 3, 2022
    Configuration menu
    Copy the full SHA
    be642d4 View commit details
    Browse the repository at this point in the history
  2. Fix build

    Nicholas Shulman committed Aug 3, 2022
    Configuration menu
    Copy the full SHA
    c75c203 View commit details
    Browse the repository at this point in the history

Commits on Aug 30, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Aug 30, 2022
    Configuration menu
    Copy the full SHA
    2822589 View commit details
    Browse the repository at this point in the history

Commits on Sep 7, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Sep 7, 2022
    Configuration menu
    Copy the full SHA
    0fe26a1 View commit details
    Browse the repository at this point in the history
  2. Remove unused imports

    Nicholas Shulman committed Sep 7, 2022
    Configuration menu
    Copy the full SHA
    5390c34 View commit details
    Browse the repository at this point in the history

Commits on Nov 8, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Nov 8, 2022
    Configuration menu
    Copy the full SHA
    7d39a1f View commit details
    Browse the repository at this point in the history

Commits on Nov 9, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Nov 9, 2022
    Configuration menu
    Copy the full SHA
    25ab2b3 View commit details
    Browse the repository at this point in the history

Commits on Nov 18, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Nov 18, 2022
    Configuration menu
    Copy the full SHA
    cc01cd0 View commit details
    Browse the repository at this point in the history

Commits on Nov 21, 2022

  1. BilinearRegressionFit

    Nicholas Shulman committed Nov 21, 2022
    Configuration menu
    Copy the full SHA
    9045f38 View commit details
    Browse the repository at this point in the history

Commits on Dec 15, 2022

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    nickshulman committed Dec 15, 2022
    Configuration menu
    Copy the full SHA
    6a0c046 View commit details
    Browse the repository at this point in the history

Commits on Dec 28, 2022

  1. Merge branch 'Skyline/work/20220411_BilinearLimitOfQuantification' of h…

    …ttps://github.com/ProteoWizard/pwiz into Skyline/work/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Dec 28, 2022
    Configuration menu
    Copy the full SHA
    693441c View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Dec 28, 2022
    Configuration menu
    Copy the full SHA
    2ce456f View commit details
    Browse the repository at this point in the history
  3. Fix line endings

    Nicholas Shulman committed Dec 28, 2022
    Configuration menu
    Copy the full SHA
    0340b5a View commit details
    Browse the repository at this point in the history
  4. Fix NaN's in optimize transitions dialog

    Nicholas Shulman committed Dec 28, 2022
    Configuration menu
    Copy the full SHA
    e783e94 View commit details
    Browse the repository at this point in the history

Commits on Jan 25, 2023

  1. Add random seed to OptimizeTransitionsDlg

    Nicholas Shulman committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    da55d85 View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Jan 25, 2023
    Configuration menu
    Copy the full SHA
    9821f1b View commit details
    Browse the repository at this point in the history

Commits on Feb 4, 2023

  1. OptimizeTransitionDetails

    Nicholas Shulman committed Feb 4, 2023
    Configuration menu
    Copy the full SHA
    0fa22df View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20220411_BilinearLimitOfQuantification
    Nicholas Shulman committed Feb 4, 2023
    Configuration menu
    Copy the full SHA
    4d21a26 View commit details
    Browse the repository at this point in the history

Commits on Feb 5, 2023

  1. Transition optimization

    nickshulman committed Feb 5, 2023
    Configuration menu
    Copy the full SHA
    05af8e4 View commit details
    Browse the repository at this point in the history
  2. OptimizeTransitionsForm

    Nicholas Shulman committed Feb 5, 2023
    Configuration menu
    Copy the full SHA
    4717371 View commit details
    Browse the repository at this point in the history

Commits on Feb 6, 2023

  1. CalibrationGraphControl

    nickshulman committed Feb 6, 2023
    Configuration menu
    Copy the full SHA
    1de8900 View commit details
    Browse the repository at this point in the history

Commits on Feb 7, 2023

  1. Reject bilinear curves with negative slopes.

    Nicholas Shulman committed Feb 7, 2023
    Configuration menu
    Copy the full SHA
    4b6352f View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Feb 7, 2023
    Configuration menu
    Copy the full SHA
    6bb73de View commit details
    Browse the repository at this point in the history

Commits on Feb 9, 2023

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Feb 9, 2023
    Configuration menu
    Copy the full SHA
    caa9f8e View commit details
    Browse the repository at this point in the history

Commits on Mar 18, 2023

  1. Option whether combine points at same concentration.

    Nicholas Shulman committed Mar 18, 2023
    Configuration menu
    Copy the full SHA
    2820782 View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Mar 18, 2023
    Configuration menu
    Copy the full SHA
    f9a5dae View commit details
    Browse the repository at this point in the history
  3. Fix build

    Nicholas Shulman committed Mar 18, 2023
    Configuration menu
    Copy the full SHA
    00f8bd9 View commit details
    Browse the repository at this point in the history

Commits on Mar 22, 2023

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    d9f330d View commit details
    Browse the repository at this point in the history

Commits on Mar 23, 2023

  1. Menu item brings up OptimizeTransitionsForm.

    Button on OptimizeTransitionsForm to bring up OptimizeDocumentTransitionsForm.
    Nicholas Shulman committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    f5f4dec View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    a9fb8e8 View commit details
    Browse the repository at this point in the history
  3. Fix bug where BilinearCurveFitter.ComputeQuantLimits had switched LOD…

    … and LOQ
    Nicholas Shulman committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    11aef05 View commit details
    Browse the repository at this point in the history
  4. Fix problem where QuantificationSettings.MaxLoqCv needed to be divide…

    …d by 100.
    Nicholas Shulman committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    d0f3518 View commit details
    Browse the repository at this point in the history
  5. GetStandardPoints

    Nicholas Shulman committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    54703f9 View commit details
    Browse the repository at this point in the history

Commits on Mar 24, 2023

  1. Clean up UI

    Nicholas Shulman committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    d692062 View commit details
    Browse the repository at this point in the history
  2. Make OptimizeDocumentTransitionsForm not dockable.

    Nicholas Shulman committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    73bc9cd View commit details
    Browse the repository at this point in the history
  3. Make CalibrationCurveOptions immutable

    Nicholas Shulman committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    3c736db View commit details
    Browse the repository at this point in the history
  4. Option to show bootstrap curves

    Nicholas Shulman committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    f6426e1 View commit details
    Browse the repository at this point in the history

Commits on Mar 25, 2023

  1. CalibrationCurveOptionsDlg

    Nicholas Shulman committed Mar 25, 2023
    Configuration menu
    Copy the full SHA
    11bb55d View commit details
    Browse the repository at this point in the history

Commits on Mar 28, 2023

  1. Fix title on Calibration Curve Options dialog.

    Nicholas Shulman committed Mar 28, 2023
    Configuration menu
    Copy the full SHA
    c771f35 View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Mar 28, 2023
    Configuration menu
    Copy the full SHA
    0586a65 View commit details
    Browse the repository at this point in the history
  3. Make it so that points below the baseline of a bilinear curve all get…

    … weighted the same.
    Nicholas Shulman committed Mar 28, 2023
    Configuration menu
    Copy the full SHA
    fd6a038 View commit details
    Browse the repository at this point in the history

Commits on Mar 29, 2023

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Mar 29, 2023
    Configuration menu
    Copy the full SHA
    89f855d View commit details
    Browse the repository at this point in the history

Commits on Mar 31, 2023

  1. Add class "BootstrapFiguresOfMeritCalculator"

    Nicholas Shulman committed Mar 31, 2023
    Configuration menu
    Copy the full SHA
    68d17c7 View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Mar 31, 2023
    Configuration menu
    Copy the full SHA
    6a275be View commit details
    Browse the repository at this point in the history

Commits on Apr 5, 2023

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Apr 5, 2023
    Configuration menu
    Copy the full SHA
    4e890e9 View commit details
    Browse the repository at this point in the history

Commits on Apr 14, 2023

  1. Fix some warnings.

    Nicholas Shulman committed Apr 14, 2023
    Configuration menu
    Copy the full SHA
    d59cdd3 View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Apr 14, 2023
    Configuration menu
    Copy the full SHA
    797dd8f View commit details
    Browse the repository at this point in the history

Commits on Apr 15, 2023

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Apr 15, 2023
    Configuration menu
    Copy the full SHA
    137151e View commit details
    Browse the repository at this point in the history

Commits on Apr 18, 2023

  1. Fix "TestCalibration"

    Nicholas Shulman committed Apr 18, 2023
    Configuration menu
    Copy the full SHA
    5a38410 View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Apr 18, 2023
    Configuration menu
    Copy the full SHA
    b16adf8 View commit details
    Browse the repository at this point in the history
  3. TransitionOptimizationTest

    Nicholas Shulman committed Apr 18, 2023
    Configuration menu
    Copy the full SHA
    319a1ac View commit details
    Browse the repository at this point in the history

Commits on Apr 21, 2023

  1. Fix some tests

    Nicholas Shulman committed Apr 21, 2023
    Configuration menu
    Copy the full SHA
    4c8fb9b View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Apr 21, 2023
    Configuration menu
    Copy the full SHA
    466c238 View commit details
    Browse the repository at this point in the history

Commits on Apr 24, 2023

  1. Revert Skyline.csproj settings related to the private build I had bee…

    …n publishing.
    Nicholas Shulman committed Apr 24, 2023
    Configuration menu
    Copy the full SHA
    b5cb2c6 View commit details
    Browse the repository at this point in the history
  2. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Apr 24, 2023
    Configuration menu
    Copy the full SHA
    3d79e99 View commit details
    Browse the repository at this point in the history

Commits on May 7, 2023

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed May 7, 2023
    Configuration menu
    Copy the full SHA
    ed99fec View commit details
    Browse the repository at this point in the history
  2. Fix build

    Nicholas Shulman committed May 7, 2023
    Configuration menu
    Copy the full SHA
    4c26a57 View commit details
    Browse the repository at this point in the history
  3. Fix TestFiguresOfMerit

    Nicholas Shulman committed May 7, 2023
    Configuration menu
    Copy the full SHA
    474b56d View commit details
    Browse the repository at this point in the history
  4. Fix TestBilinearFit

    Nicholas Shulman committed May 7, 2023
    Configuration menu
    Copy the full SHA
    a01cbe7 View commit details
    Browse the repository at this point in the history

Commits on May 8, 2023

  1. Fix code inspection

    Nicholas Shulman committed May 8, 2023
    Configuration menu
    Copy the full SHA
    3658bd4 View commit details
    Browse the repository at this point in the history

Commits on May 25, 2023

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed May 25, 2023
    Configuration menu
    Copy the full SHA
    6d5e994 View commit details
    Browse the repository at this point in the history

Commits on May 31, 2023

  1. Configuration menu
    Copy the full SHA
    165865e View commit details
    Browse the repository at this point in the history

Commits on Aug 25, 2023

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    ae03f3a View commit details
    Browse the repository at this point in the history
  2. Fix bad merge

    Nicholas Shulman committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    92b42f4 View commit details
    Browse the repository at this point in the history

Commits on May 22, 2024

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    nickshulman committed May 22, 2024
    Configuration menu
    Copy the full SHA
    9e01b96 View commit details
    Browse the repository at this point in the history
  2. Add missing files.

    nickshulman committed May 22, 2024
    Configuration menu
    Copy the full SHA
    7c70519 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    92363fe View commit details
    Browse the repository at this point in the history

Commits on Jul 25, 2024

  1. Merge remote-tracking branch 'remotes/origin/master' into Skyline/wor…

    …k/20230204_TransitionOptimization
    Nicholas Shulman committed Jul 25, 2024
    Configuration menu
    Copy the full SHA
    c0a8036 View commit details
    Browse the repository at this point in the history

Commits on Jul 26, 2024

  1. Configuration menu
    Copy the full SHA
    6ea28f9 View commit details
    Browse the repository at this point in the history