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add a narrow dependency group for testing in CI #348

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merged 12 commits into from
Aug 1, 2024
Merged

add a narrow dependency group for testing in CI #348

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aff818d
add dependency group test
sbidari Jul 31, 2024
b2dc861
update website build dep group
sbidari Jul 31, 2024
e28ba91
change dep group for running deptry
sbidari Jul 31, 2024
a3de8ce
fix typo
sbidari Jul 31, 2024
0b6818f
add dev group
sbidari Jul 31, 2024
20b638c
update dep group for running deptry
sbidari Jul 31, 2024
b645896
moving packages between dep groups
sbidari Jul 31, 2024
959e4fa
test jupyter dependencies
sbidari Jul 31, 2024
9bcbfae
Update .github/workflows/deptry.yml
sbidari Jul 31, 2024
a3ec7b2
update deptry
sbidari Jul 31, 2024
ff0b4c4
remove pillow
sbidari Jul 31, 2024
e9390a0
Merge branch 'main' into 337-define-a-narrow-test-set-of-poetry-depen…
damonbayer Aug 1, 2024
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4 changes: 2 additions & 2 deletions .github/workflows/deptry.yml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: model
name: dependency-check

on:
pull_request:
Expand Down Expand Up @@ -29,4 +29,4 @@ jobs:

- name: run deptry
run: |
poetry run deptry . --per-rule-ignores "DEP001=pyrenew,DEP003=pytest"
poetry run deptry . --per-rule-ignores "DEP001=pyrenew,DEP001=pytest,DEP003=pytest"
2 changes: 1 addition & 1 deletion .github/workflows/test_model.yml
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Expand Up @@ -24,7 +24,7 @@ jobs:
run: pip install poetry

- name: install package
run: poetry install --with dev
run: poetry install --with test

- name: run tests
run: |
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/test_pipeline.yml
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Expand Up @@ -22,7 +22,7 @@ jobs:
run: pip install poetry

- name: install package
run: poetry install --with dev
run: poetry install --with test

- name: install pytest-cov
run: poetry run pip install pytest-cov
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4 changes: 2 additions & 2 deletions .github/workflows/website.yaml
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Expand Up @@ -36,7 +36,7 @@ jobs:
run: pip install poetry

- name: install package
run: poetry install --with dev
run: poetry install --with docs

# This section renders the quarto documents (and the README file)
# and moves them to the docs/source/_compiled_qmd directory
Expand Down Expand Up @@ -92,7 +92,7 @@ jobs:
run: pip install poetry

- name: Install dependencies with Poetry
run: poetry install --with dev
run: poetry install --with docs

# Building
- name: Build HTML using Poetry
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24 changes: 17 additions & 7 deletions pyproject.toml
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Expand Up @@ -23,22 +23,32 @@ matplotlib = "^3.8.3"
optional = true

[tool.poetry.group.dev.dependencies]
pyyaml = "^6.0.0"
nbconvert = "^7.16.4"
ipywidgets = "^8.1.3"
deptry = "^0.17.0"

[tool.poetry.group.docs]
optional = true

[tool.poetry.group.docs.dependencies]
ipykernel = "^6.29.3"
pillow = "^10.3.0"
pyyaml = "^6.0.0"
nbclient = "^0.10.0"
nbformat = "^5.10.0"
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pytest-cov = "^5.0.0"
pytest-mpl = "^0.17.0"
numpydoc = "^1.7.0"
arviz = "^0.18.0"
sphinx = "^7.2.6"
sphinxcontrib-mermaid = "^0.9.2"
sphinx-autodoc-typehints = "^2.1.0"
sphinx-book-theme = "^1.1.2"
pillow = "^10.3.0"
nbconvert = "^7.16.4"
ipywidgets = "^8.1.3"
deptry = "^0.17.0"

[tool.poetry.group.test]
optional = true

[tool.poetry.group.test.dependencies]
pytest-cov = "^5.0.0"
pytest-mpl = "^0.17.0"

[tool.numpydoc_validation]
checks = [
Expand Down