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Create Hosp Only Model from cdcgov/wastewater-informed-covid-forecasting #313

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wants to merge 51 commits into from
Closed

Create Hosp Only Model from cdcgov/wastewater-informed-covid-forecasting #313

wants to merge 51 commits into from

Commits on Jul 23, 2024

  1. first checkin

    @damonbayer
    damonbayer committed Jul 23, 2024
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  2. ignore .json

    @damonbayer
    damonbayer committed Jul 23, 2024
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Commits on Jul 24, 2024

  1. initialization working

    @damonbayer
    damonbayer committed Jul 24, 2024
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  2. load variables from stan_data

    @damonbayer
    damonbayer committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. Merge branch 'main' into dmb_hosp_only_ww_model

    @damonbayer
    damonbayer committed Jul 25, 2024
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  2. Merge branch 'main' into dmb_hosp_only_ww_model

    @damonbayer
    damonbayer committed Jul 25, 2024
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  3. Merge branch 'main' into dmb_hosp_only_ww_model

    @damonbayer
    damonbayer committed Jul 25, 2024
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Commits on Jul 26, 2024

  1. prep for update from main

    @damonbayer
    damonbayer committed Jul 26, 2024
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  2. Merge branch 'main' into dmb_hosp_only_ww_model

    @damonbayer
    damonbayer committed Jul 26, 2024
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  3. checkin (broken)

    @damonbayer
    damonbayer committed Jul 26, 2024
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Commits on Jul 29, 2024

  1. working Rt

    @damonbayer
    damonbayer committed Jul 29, 2024
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  2. fix a prior

    @damonbayer
    damonbayer committed Jul 29, 2024
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  3. infection with feedback (works but looks wrong)

    @damonbayer
    damonbayer committed Jul 29, 2024
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  4. cleanup

    @damonbayer
    damonbayer committed Jul 29, 2024
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Commits on Jul 30, 2024

  1. fixing some things

    @damonbayer
    damonbayer committed Jul 30, 2024
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  2. check in

    @damonbayer
    damonbayer committed Jul 30, 2024
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  3. Merge branch 'main' into dmb_hosp_only_ww_model

    @damonbayer
    damonbayer committed Jul 30, 2024
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  4. fix AR process

    @damonbayer
    damonbayer committed Jul 30, 2024
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  5. Merge branch 'main' into dmb_hosp_only_ww_model

    @damonbayer
    damonbayer committed Jul 30, 2024
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Commits on Jul 31, 2024

  1. move n_timepoints to sample arg

    @damonbayer
    damonbayer committed Jul 31, 2024
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Commits on Aug 1, 2024

  1. fix ihr broadcasting

    @damonbayer
    damonbayer committed Aug 1, 2024
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  2. cleanup initialization

    @damonbayer
    damonbayer committed Aug 1, 2024
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  3. day of week effect

    @damonbayer
    damonbayer committed Aug 1, 2024
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  4. cleanup day of week effect

    @damonbayer
    damonbayer committed Aug 1, 2024
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  5. correct dotwe

    @damonbayer
    damonbayer committed Aug 1, 2024
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Commits on Aug 2, 2024

  1. add latent hospitalizations

    @damonbayer
    damonbayer committed Aug 2, 2024
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  2. rename hospitalizations

    @damonbayer
    damonbayer committed Aug 2, 2024
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  3. data observation model

    @damonbayer
    damonbayer committed Aug 2, 2024
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  4. rename n_timepoints

    @damonbayer
    damonbayer committed Aug 2, 2024
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  5. work with supplied data

    @damonbayer
    damonbayer committed Aug 2, 2024
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  6. replace ceil with integer division

    @damonbayer
    damonbayer committed Aug 2, 2024
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  7. prior predictive

    @damonbayer
    damonbayer committed Aug 2, 2024
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  8. posterior

    @damonbayer
    damonbayer committed Aug 2, 2024
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  9. remove json from gitignore

    @damonbayer
    damonbayer committed Aug 2, 2024
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  10. add stan data

    @damonbayer
    damonbayer committed Aug 2, 2024
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  11. convert to tutorial

    @damonbayer
    damonbayer committed Aug 2, 2024
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  12. fix document title

    @damonbayer
    damonbayer committed Aug 2, 2024
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  13. try avoiding ipython error

    @damonbayer
    damonbayer committed Aug 2, 2024
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Commits on Aug 7, 2024

  1. Merge branch 'main' into dmb_hosp_only_ww_model

    @dylanhmorris
    dylanhmorris committed Aug 7, 2024
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Commits on Aug 12, 2024

  1. more posterior plots

    @damonbayer
    damonbayer committed Aug 12, 2024
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  2. more posterior plots

    @damonbayer
    damonbayer committed Aug 12, 2024
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  3. fix t_pre_init

    @damonbayer
    damonbayer committed Aug 12, 2024
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  4. adjust t_pre_init for experimentation

    @damonbayer
    damonbayer committed Aug 12, 2024
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  5. save latent infections for debug

    @damonbayer
    damonbayer committed Aug 12, 2024
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  6. save rtu for debugging

    @damonbayer
    damonbayer committed Aug 12, 2024
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  7. more rtu observations

    @damonbayer
    damonbayer committed Aug 12, 2024
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Commits on Aug 14, 2024

  1. correctly scale by population size

    @damonbayer
    damonbayer committed Aug 14, 2024
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  2. note about population size

    @damonbayer
    damonbayer committed Aug 14, 2024
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  3. use tile_unitl_n

    @damonbayer
    damonbayer committed Aug 14, 2024
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  4. more chains

    @damonbayer
    damonbayer committed Aug 14, 2024
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Commits on Aug 15, 2024

  1. fix latent -> observed hosp admission offset

    @damonbayer
    damonbayer committed Aug 15, 2024
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