lower lib_type_mate_cutoff #160

zavolanlab · Jan 23, 2024 · 874f85b · 874f85b
1 parent 8c3eeb7
commit 874f85b
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/htsinfer/cli.py b/htsinfer/cli.py
@@ -232,7 +232,7 @@ def __call__(
         dest="lib_type_mates_cutoff",
         metavar="FLOAT",
         type=float,
-        default=0.95,
+        default=0.85,
         help=(
             "minimum fraction of mates that can be mapped to compatible loci "
             "and are considered concordant pairs / all mates"

diff --git a/htsinfer/models.py b/htsinfer/models.py
@@ -440,7 +440,7 @@ class Args(BaseModel):
     lib_source_min_match_pct: float = 2
     lib_source_min_freq_ratio: float = 2
     lib_type_max_distance: int = 1000
-    lib_type_mates_cutoff: float = 0.95
+    lib_type_mates_cutoff: float = 0.85
     read_orientation_min_mapped_reads: int = 20
     read_orientation_min_fraction: float = 0.75
     path_1_processed: Path = Path()