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yh202109 committed Jul 21, 2024
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4 changes: 2 additions & 2 deletions _downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
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2 changes: 1 addition & 1 deletion _downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
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6 changes: 3 additions & 3 deletions _sources/statlab_kappa2.rst.txt
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Expand Up @@ -284,10 +284,10 @@ and
=& E\left(\sum_{j} N_{ij}^4\right) + E\left(\sum_j\sum_{k \neq j} N_{ij}^2 N_{ik}^2 \right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2.
We can use the MGF :math:`\left(\sum_{j}p_je^{t_j}\right)^R` to derive
:math:`E\left(N__{ij}^2\right) = Rp_j + R(R-1)p_j^2`, and
:math:`E\left(N__{ij}^3\right) = Rp_j + 3R(R-1)p_j^2 + R(R-1)(R-2)p_j^3`.
:math:`E\left(N_{ij}^2\right) = Rp_j + R(R-1)p_j^2`, and
:math:`E\left(N_{ij}^3\right) = Rp_j + 3R(R-1)p_j^2 + R(R-1)(R-2)p_j^3`.

The first element of :eq:`eq_kappa2_vn2` is [2]_ :sup:`(Eq. 12)`
The first element of :eq:`eq_kappa2_vn2` [2]_ :sup:`(Eq. 12)`

.. math::
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2 changes: 1 addition & 1 deletion _static/reports/coverage/coverage.xml
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2 changes: 1 addition & 1 deletion _static/reports/junit/junit.xml
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10 changes: 2 additions & 8 deletions example_cdtg.html
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Expand Up @@ -133,13 +133,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 11.1% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
warnings.warn(msg, UserWarning)
/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 35.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
warnings.warn(msg, UserWarning)
</pre></div>
</div>
<img alt="_images/57a0a6ec0f90e97b1170c4bbd2a4b4420870be5b593b6aabc0ef4c8a56691529.png" src="_images/57a0a6ec0f90e97b1170c4bbd2a4b4420870be5b593b6aabc0ef4c8a56691529.png" />
<img alt="_images/4333ef22d907b403ee1b61fd1b7a9c331b3d0ec52bd068e5ca8a7969dcb2699a.png" src="_images/4333ef22d907b403ee1b61fd1b7a9c331b3d0ec52bd068e5ca8a7969dcb2699a.png" />
</div>
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<p>To create a line plot:</p>
Expand All @@ -151,7 +145,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
</div>
</div>
<div class="cell_output docutils container">
<img alt="_images/e6e1c553d0ab365d3ec6f96cd19de6cc463c85fea512d3dd63e657a53ec3865f.png" src="_images/e6e1c553d0ab365d3ec6f96cd19de6cc463c85fea512d3dd63e657a53ec3865f.png" />
<img alt="_images/733b1bf1bb4c8d666bbfd366a9a6ac701bf8defa2eebd850ac9ab8ebbba61ccf.png" src="_images/733b1bf1bb4c8d666bbfd366a9a6ac701bf8defa2eebd850ac9ab8ebbba61ccf.png" />
</div>
</div>
</section>
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Expand Up @@ -131,8 +131,8 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment subject visit meal calorie
0 STD1 TRT1 SUBJ01 VISIT1 1 615
1 STD1 TRT1 SUBJ01 VISIT1 2 1009
0 STD1 TRT1 SUBJ01 VISIT1 1 1805
1 STD1 TRT1 SUBJ01 VISIT1 2 1491
</pre></div>
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Expand All @@ -149,12 +149,12 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment subject visit N(0&lt;=X&lt;500) N(500&lt;=X&lt;1000) \
0 STD1 TRT1 SUBJ01 VISIT1 2 1
1 STD1 TRT1 SUBJ01 VISIT2 1 0
0 STD1 TRT1 SUBJ01 VISIT1 0 1
1 STD1 TRT1 SUBJ01 VISIT2 0 1

N(1000&lt;=V&lt;=2000) N(all)
0 2 5
1 2 3
0 2 3
1 3 4
</pre></div>
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</div>
Expand All @@ -169,22 +169,21 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment visit N(0&lt;=X&lt;3) N(3&lt;=X&lt;5) N(5&lt;=V&lt;=7) N(all)
0 STD1 TRT1 VISIT1 3 10 7 20
1 STD1 TRT1 VISIT2 3 11 2 16
2 STD1 TRT1 VISIT3 4 6 3 13
3 STD1 TRT1 VISIT4 3 3 1 7
4 STD1 TRT2 VISIT1 6 11 3 20
5 STD1 TRT2 VISIT2 6 5 3 14
6 STD1 TRT2 VISIT3 5 2 0 7
7 STD1 TRT2 VISIT4 1 1 1 3
8 STD2 TRT1 VISIT1 4 11 5 20
9 STD2 TRT1 VISIT2 5 7 3 15
10 STD2 TRT1 VISIT3 4 3 1 8
11 STD2 TRT1 VISIT4 0 1 1 2
12 STD2 TRT2 VISIT1 12 6 2 20
13 STD2 TRT2 VISIT2 2 10 4 16
14 STD2 TRT2 VISIT3 2 4 4 10
15 STD2 TRT2 VISIT4 0 4 1 5
0 STD1 TRT1 VISIT1 4 8 8 20
1 STD1 TRT1 VISIT2 4 7 4 15
2 STD1 TRT1 VISIT3 1 5 2 8
3 STD1 TRT1 VISIT4 0 2 1 3
4 STD1 TRT2 VISIT1 4 11 5 20
5 STD1 TRT2 VISIT2 7 5 0 12
6 STD1 TRT2 VISIT3 4 2 1 7
7 STD2 TRT1 VISIT1 4 8 8 20
8 STD2 TRT1 VISIT2 1 11 3 15
9 STD2 TRT1 VISIT3 3 6 2 11
10 STD2 TRT1 VISIT4 3 2 1 6
11 STD2 TRT2 VISIT1 5 9 6 20
12 STD2 TRT2 VISIT2 5 8 4 17
13 STD2 TRT2 VISIT3 0 9 3 12
14 STD2 TRT2 VISIT4 1 2 3 6
</pre></div>
</div>
</div>
Expand All @@ -198,22 +197,21 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment visit Sum(0&lt;=X&lt;3) Sum(3&lt;=X&lt;5) Sum(5&lt;=V&lt;=7) Sum(all)
0 STD1 TRT1 VISIT1 6 34 35 75
1 STD1 TRT1 VISIT2 6 38 10 54
2 STD1 TRT1 VISIT3 8 23 15 46
3 STD1 TRT1 VISIT4 6 9 5 20
4 STD1 TRT2 VISIT1 12 38 15 65
5 STD1 TRT2 VISIT2 12 18 15 45
6 STD1 TRT2 VISIT3 10 7 0 17
7 STD1 TRT2 VISIT4 2 4 5 11
8 STD2 TRT1 VISIT1 8 38 25 71
9 STD2 TRT1 VISIT2 10 24 15 49
10 STD2 TRT1 VISIT3 8 11 5 24
11 STD2 TRT1 VISIT4 0 4 5 9
12 STD2 TRT2 VISIT1 24 21 10 55
13 STD2 TRT2 VISIT2 4 36 20 60
14 STD2 TRT2 VISIT3 4 13 20 37
15 STD2 TRT2 VISIT4 0 15 5 20
0 STD1 TRT1 VISIT1 8 26 40 74
1 STD1 TRT1 VISIT2 8 24 20 52
2 STD1 TRT1 VISIT3 2 18 10 30
3 STD1 TRT1 VISIT4 0 7 5 12
4 STD1 TRT2 VISIT1 8 37 25 70
5 STD1 TRT2 VISIT2 14 17 0 31
6 STD1 TRT2 VISIT3 8 7 5 20
7 STD2 TRT1 VISIT1 8 29 40 77
8 STD2 TRT1 VISIT2 2 42 15 59
9 STD2 TRT1 VISIT3 6 21 10 37
10 STD2 TRT1 VISIT4 6 7 5 18
11 STD2 TRT2 VISIT1 10 33 30 73
12 STD2 TRT2 VISIT2 10 29 20 59
13 STD2 TRT2 VISIT3 0 30 15 45
14 STD2 TRT2 VISIT4 2 7 15 24
</pre></div>
</div>
</div>
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Expand Up @@ -561,9 +561,6 @@ <h2>Module 4<a class="headerlink" href="#module-4" title="Link to this heading">
└── 4.3 Literature references
</pre></div>
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
</pre></div>
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</div>
</div>
</section>
Expand Down Expand Up @@ -732,9 +729,6 @@ <h2>Module 5<a class="headerlink" href="#module-5" title="Link to this heading">
└── 5.4 Literature references
</pre></div>
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
</pre></div>
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</section>
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Expand Up @@ -598,6 +598,9 @@ <h2>Module 4<a class="headerlink" href="#module-4" title="Link to this heading">
└── 4.3 Literature references
</pre></div>
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
</pre></div>
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</div>
</section>
Expand Down Expand Up @@ -785,9 +788,6 @@ <h2>Module 5<a class="headerlink" href="#module-5" title="Link to this heading">
└── 5.4 Literature references
</pre></div>
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
</pre></div>
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</section>
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