Fix abspath not consistently applied #535
Workflow file for this run
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| name: Test SingleM with Setup-Miniconda From Marketplace | |
| on: [push, pull_request] | |
| jobs: | |
| miniconda: | |
| name: Miniconda ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/[email protected] | |
| with: | |
| activate-environment: test | |
| environment-file: singlem.yml | |
| python-version: 3.9 # 3.10 fails to setup environment | |
| # auto-activate-base: false | |
| # mamba-version: "*" # Appears to be broken as of writing. | |
| channels: conda-forge,defaults,bioconda | |
| - run: | | |
| conda info | |
| conda list | |
| - name: Run pytest | |
| run: | | |
| pytest test |