muhapsfinder is a pipeline for generating sets of microhapotypes from VCF files. This pipeline is heavily based on the code from https://github.com/svsiegel/vivax-mhaps, with some modification to make the code work using ordinary, preprocessed VCF files.
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A pipeline to generate microhaplotypes from VCF data
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vivaxgen/muhapsfinder
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A pipeline to generate microhaplotypes from VCF data
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