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@vivaxgen

The vivaxGEN Project

README.rst

vivaxGEN

The vivaxGEN github repository provides the necessary tools to perform analysis on molecular surveillance data supporting the elimination of Plasmodium vivax.

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  1. ngs-pipeline ngs-pipeline Public

    vivaxGEN NGS pipeline for whole genome and targeted sequencing

    Python 2

  2. MicroHaps MicroHaps Public

    Python

  3. G6PD_MinION G6PD_MinION Public

    Pipeline for G6PD genotyping using ONT-based amplicon assay

    Python

  4. sra-repo sra-repo Public

    SRA repository management system

    Python

Repositories

Showing 10 of 23 repositories
  • mea-pipeline Public

    Molecular Epidemiology Analytics (MEA) Pipeline

    vivaxgen/mea-pipeline’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 2, 2024
  • MicroHaps Public
    vivaxgen/MicroHaps’s past year of commit activity
    Python 0 0 0 0 Updated Oct 1, 2024
  • ngs-pipeline Public

    vivaxGEN NGS pipeline for whole genome and targeted sequencing

    vivaxgen/ngs-pipeline’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 1, 2024
  • vgnpc-plasmodium-spp Public

    vivaxGEN NGS-Pipeline configuration settings for Plasmodium spp

    vivaxgen/vgnpc-plasmodium-spp’s past year of commit activity
    Shell 0 Unlicense 0 0 0 Updated Sep 19, 2024
  • microhaps_mito Public
    vivaxgen/microhaps_mito’s past year of commit activity
    Python 0 0 0 0 Updated Sep 6, 2024
  • G6PD_MinION Public

    Pipeline for G6PD genotyping using ONT-based amplicon assay

    vivaxgen/G6PD_MinION’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 19, 2024
  • stable-tag-tester Public

    tester

    vivaxgen/stable-tag-tester’s past year of commit activity
    0 0 0 0 Updated Aug 12, 2024
  • vvg-base Public

    vivaxGEN base installation utility

    vivaxgen/vvg-base’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 12, 2024
  • warpedLMM-py3 Public Forked from PMBio/warpedLMM

    warpedLMM updated to Python 3.x

    vivaxgen/warpedLMM-py3’s past year of commit activity
    Python 0 8 0 0 Updated Jun 26, 2024
  • muhapsfinder Public

    A pipeline to generate microhaplotypes from VCF data

    vivaxgen/muhapsfinder’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 26, 2024
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