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Fix typos, add processed files
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atc3 committed Apr 18, 2024
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Showing 27 changed files with 3,146 additions and 175 deletions.
1,477 changes: 1,406 additions & 71 deletions static_data/flu/genes_processed.json
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/1.fa
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>EPI1868397|A/Jiangsu/428/2021|EPI_ISL_2380100|PB2|Original|WHO Chinese National Influenza Center
>EPI1868397|A/Jiangsu/428/2021|EPI_ISL_2380100|PB2|Original|WHO-Chinese-National-Influenza-Center
agcaaaagcaggtcaaatatattcaatatggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcga
gatactgacaaaaacaactgtggaccatatggccataattaagaaatacacatcgggaagacaggagaagaatcctgccc
ttaggatgaagtggatgatggcaatgaagtatccaattacagcagacaaaaggataatggagatgatcccagaaaggaat
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/2.fa
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>EPI1868396|A/Jiangsu/428/2021|EPI_ISL_2380100|PB1|Original|WHO Chinese National Influenza Center
>EPI1868396|A/Jiangsu/428/2021|EPI_ISL_2380100|PB1|Original|WHO-Chinese-National-Influenza-Center
agcaaaagcaggcaaaccatttgaatggatgtcaatccgactttacttttcttgaaagtgccagtgcaaaatgctataag
taccactttcccttatactggagaccctccatacagccatggaacgggaacagggtacaccatggacacagtcaacagaa
cacataaatactcagaaaaaggaaaatggacaacgaacacagagactggagcaccccaactcaatccagttgatggacca
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/3.fa
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>EPI1868395|A/Jiangsu/428/2021|EPI_ISL_2380100|PA|Original|WHO Chinese National Influenza Center
>EPI1868395|A/Jiangsu/428/2021|EPI_ISL_2380100|PA|Original|WHO-Chinese-National-Influenza-Center
agcaaaagcaggtactgatccaaaatggaagactttgtgcgacaatgcttcaatccaatgatcgtcgagcttgcggaaaa
ggcaatgaaagagtatggggaagatccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgct
tcatgtattctgatttccacttcattgacgaacgaggcgaatcaactattattgaatctggcgatccaaatgtattgttg
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/4.fa
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>EPI1868394|A/Jiangsu/428/2021|EPI_ISL_2380100|HA|Original|WHO Chinese National Influenza Center
>EPI1868394|A/Jiangsu/428/2021|EPI_ISL_2380100|HA|Original|WHO-Chinese-National-Influenza-Center
agcaaaagcaggggtcacaatgtacaaaatagtagtgataatcgcgttccttggaactgtgaaggctcttgataagatct
gcctgggacatcatgcagtggccaatgggaccattgtaaagactctcacaagtgaacaggaagaggtgacaaatgctact
gagacagtggagagcaaaggcctaaacaaattatgtatgaagggaaggaaccataaagacctgggcaactgccatccaat
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/5.fa
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>EPI1868393|A/Jiangsu/428/2021|EPI_ISL_2380100|NP|Original|WHO Chinese National Influenza Center
>EPI1868393|A/Jiangsu/428/2021|EPI_ISL_2380100|NP|Original|WHO-Chinese-National-Influenza-Center
agcaaaagcagggtagataatcactcactgagtgacatcaacatcatggcgtctcaaggcaccaaacgatcctatgaaca
gatggagactggtggagaacgccagaatgctactgagatcagggcatctgtcggaagaatggttagcggcattgggagat
tctacatacaaatgtgtacagaactcaaactcagtgacaatgaagggaggctgatccagaacagtataacaatagagaga
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/6.fa
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>EPI1868392|A/Jiangsu/428/2021|EPI_ISL_2380100|NA|Original|WHO Chinese National Influenza Center
>EPI1868392|A/Jiangsu/428/2021|EPI_ISL_2380100|NA|Original|WHO-Chinese-National-Influenza-Center
agcaaaagcaggtgcgaaatgaatccaaatcagaagataataacactcggtgtagtgaacacaactctgtcaacattagc
cctcctcattggaattgggaatcagattttcaacattgttatacatgagaaagtaggagtacatcaaactgtggtatgcc
caacaacaacacccacagtggtaccaaactgcagtgaaaccacaattacatacaacaacactgtggtaaacaacataaca
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/7.fa
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>EPI1868391|A/Jiangsu/428/2021|EPI_ISL_2380100|MP|Original|WHO Chinese National Influenza Center
>EPI1868391|A/Jiangsu/428/2021|EPI_ISL_2380100|MP|Original|WHO-Chinese-National-Influenza-Center
agcaaaagcaggtagatgtttaaagatgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggcc
ccctcaaagccgagatcgcgcaaagacttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtgg
ataaagacaagaccaatcctgtcacctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcg
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/8.fa
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>EPI1868390|A/Jiangsu/428/2021|EPI_ISL_2380100|NS|Original|WHO Chinese National Influenza Center
>EPI1868390|A/Jiangsu/428/2021|EPI_ISL_2380100|NS|Original|WHO-Chinese-National-Influenza-Center
agcaaaagcagggtgacaaagacataatggattccaacacagtatcaagcttccaggtagactgctttctttggcatgtt
cgcaaacgatttgcagaccaagaaatgggtgatgccccatttctagaccggcttcgccgagatcaaaagtccctgagggg
aagaagcagcactcttggtctagacatcagaactgcaacacgtgaaggaaagcatatagtggagcggattttagaagaag
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/1.fa
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>EPI497484|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB2|E1|WHO Chinese National Influenza Center
>EPI497484|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB2|E1|WHO-Chinese-National-Influenza-Center
atggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcgagatactgacaaaaacaactgtggacca
tatggccataatcaagaaatacacatcgggaagacaggagaagaatcctgcccttaggatgaagtggatgatggcgatga
aatatccaattacagcagacaaaaggataatggagatgatcccagaaaggaatgagcaaggtcagaccctttggagcaag
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/2.fa
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>EPI497483|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB1|E1|WHO Chinese National Influenza Center
>EPI497483|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB1|E1|WHO-Chinese-National-Influenza-Center
atggatgtcaacccgactttacttttcttgaaagtgccagcgcaaaatgccataagtacaacgttcccttatactggaga
ccctccatacagccatggaacaggaacaggatacaccatggacacagtcaacagaacacataaatactcagaaaatggaa
agtggacaacgaacacagagactggagcaccccaactaaatccgattgatggaccattgcctgaggacaacgagccaagt
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/3.fa
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>EPI497482|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PA|E1|WHO Chinese National Influenza Center
>EPI497482|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PA|E1|WHO-Chinese-National-Influenza-Center
atggaagactttgtgcgacaatgcttcaatccaatgatcgtcgagcttgcggaaaaggcaatgaaagaatatggggaaga
tccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgcttcatgtattctgatttccacttca
ttgacgaacggggcgaatcaactattatagaatctggcgatccaaatgcgttgttgaaacatcgatttgaaataatcgaa
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/4.fa
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>EPI497477|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|HA|E1|WHO Chinese National Influenza Center
>EPI497477|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|HA|E1|WHO-Chinese-National-Influenza-Center
atgtacaaaatagtagtgataatcgcgctccttggagctgtgaaaggtcttgataaaatctgtctaggacatcatgcagt
ggctaatgggaccatcgtaaagactctcacaaacgaacaggaagaggtaaccaacgctactgaaacagtggagagtacag
gcataaacagattatgtatgaaaggaagaaaacataaagacctgggcaactgccatccaatagggatgctaatagggact
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/5.fa
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>EPI497480|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NP|E1|WHO Chinese National Influenza Center
>EPI497480|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NP|E1|WHO-Chinese-National-Influenza-Center
atggcgtctcaaggcaccaaacgatcctatgaacagatggagactggtggagaacgccagaatgctactgagatcagggc
atctgtcggaagaatggttagcggcattgggagattctacatacagatgtgtacagaactcaaactcagtgacaatgaag
ggaggctgatccagaacagtataacaatagagagaatggtactctctgcatttgatgaaagaaggaacagatacctggaa
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/6.fa
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>EPI497479|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NA|E1|WHO Chinese National Influenza Center
>EPI497479|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NA|E1|WHO-Chinese-National-Influenza-Center
atgaatccaaatcagaaaataataaccattgggtcagtatccttaggattggtaatccttaatattctcctacacatagt
tagcattacagtaacagtattggttctcccagggaatggaaataatgagagttgcaatgaaacagtcattagggaataca
atgaaacagtaagggttgagaaggtaacacaatggcacaataccaatgttattgagtatatagagagaccggagaatgat
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/7.fa
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>EPI497478|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|MP|E1|WHO Chinese National Influenza Center
>EPI497478|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|MP|E1|WHO-Chinese-National-Influenza-Center
atgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggccccctcaaagccgagatcgcgcagag
acttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtggataaagacaagaccaatcttgtcac
ctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacgttttgtc
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/8.fa
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>EPI497481|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NS|E1|WHO Chinese National Influenza Center
>EPI497481|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NS|E1|WHO-Chinese-National-Influenza-Center
atggattccaacactgtgtcaagcttccaggtagactgctttctttggcatgtccgcaaacggtttgcagaccaagaact
gggtgatgccccatttctagaccggcttcgccgagatcagaagtccctgagaggaagaagcagcactcttggtctggaca
tcagaacagcaactcgtgaaggaaagcatatagtggagcgaattctggaggaagagtcagacgaagcatttaaaatgact
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H7NX/A-Anhui-1-2013/1.fa
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>EPI439504|A/Anhui/1/2013|EPI_ISL_138739|PB2|E1|WHO Chinese National Influenza Center
>EPI439504|A/Anhui/1/2013|EPI_ISL_138739|PB2|E1|WHO-Chinese-National-Influenza-Center
atggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcgagatactgacaaaaacaactgtggacca
tatggccataatcaagaaatatacatcaggaagacaggagaagaatcctgcccttaggatgaagtggatgatggcaatga
aatatccaattacggcagacaaaaggataatggagatgatcccggaaagaaatgagcaaggtcagaccctttggagcaag
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H7NX/A-Anhui-1-2013/2.fa
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>EPI439508|A/Anhui/1/2013|EPI_ISL_138739|PB1|E1|WHO Chinese National Influenza Center
>EPI439508|A/Anhui/1/2013|EPI_ISL_138739|PB1|E1|WHO-Chinese-National-Influenza-Center
atggatgtcaatccgactttacttttcttgaaagtgccagtgcaaaatgctataagtaccactttcccttatactggaga
ccctccatacagccatggaacaggaacaggatacaccatggacacagtcaacagaacacataaatactcagaaaaaggaa
agtggacaacgaacacagagactggagcaccccaactcaatccaattgatggaccattacctgaggacaacgagccgagt
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H7NX/A-Anhui-1-2013/3.fa
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>EPI439503|A/Anhui/1/2013|EPI_ISL_138739|PA|E1|WHO Chinese National Influenza Center
>EPI439503|A/Anhui/1/2013|EPI_ISL_138739|PA|E1|WHO-Chinese-National-Influenza-Center
atggaagactttgtgcgacagtgcttcaatccaatgatcgtcgagcttgcggaaaaggcaatgaaagaatatggggaaga
tccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgcttcatgtactctgatttccacttca
tcgacgaacgaggagaatcaactataatagaatctggcgatccaaatgcgctgctgaaacaccgatttgaaataatcgaa
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H7NX/A-Anhui-1-2013/4.fa
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>EPI439507|A/Anhui/1/2013|EPI_ISL_138739|HA|E1|WHO Chinese National Influenza Center
>EPI439507|A/Anhui/1/2013|EPI_ISL_138739|HA|E1|WHO-Chinese-National-Influenza-Center
atgaacactcaaatcctggtattcgctctgattgcgatcattccaacaaatgcagacaaaatctgcctcggacatcatgc
cgtgtcaaacggaaccaaagtaaacacattaactgaaagaggagtggaagtcgtcaatgcaactgaaacagtggaacgaa
caaacatccccaggatctgctcaaaagggaaaaggacagttgacctcggtcaatgtggactcctggggacaatcactgga
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H7NX/A-Anhui-1-2013/5.fa
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>EPI439505|A/Anhui/1/2013|EPI_ISL_138739|NP|E1|WHO Chinese National Influenza Center
>EPI439505|A/Anhui/1/2013|EPI_ISL_138739|NP|E1|WHO-Chinese-National-Influenza-Center
atggcgtctcaaggcaccaaacgatcctatgaacagatggaaactggtggggaacgccagaatgctactgagatcagggc
atctgttggaagaatggttagcggcattgggagattctacatacagatgtgtacagaactcaaactcagtgacaatgaag
ggaggctgattcagaacagtataacaatagagagaatggtactctctgcatttgatgaaagaaggaacagatacctggaa
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H7NX/A-Anhui-1-2013/6.fa
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>EPI439509|A/Anhui/1/2013|EPI_ISL_138739|NA|E1|WHO Chinese National Influenza Center
>EPI439509|A/Anhui/1/2013|EPI_ISL_138739|NA|E1|WHO-Chinese-National-Influenza-Center
atgaatccaaatcagaagattctatgcacttcagccactgctatcataataggcgcaatcgcagtactcattggaatagc
aaacctaggattgaacataggactgcatctaaaaccgggctgcaattgctcacactcacaacctgaaacaaccaacacaa
gccaaacaataataaacaactattataatgaaacaaacatcaccaacatccaaatggaagagagaacaagcaggaatttc
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H7NX/A-Anhui-1-2013/7.fa
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>EPI439506|A/Anhui/1/2013|EPI_ISL_138739|MP|E1|WHO Chinese National Influenza Center
>EPI439506|A/Anhui/1/2013|EPI_ISL_138739|MP|E1|WHO-Chinese-National-Influenza-Center
atgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggccccctcaaagccgagatcgcacagag
acttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtggataaagacaagaccaatcctgtcac
ctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacggtttgtc
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2 changes: 1 addition & 1 deletion static_data/flu/mut_references/H7NX/A-Anhui-1-2013/8.fa
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>EPI439510|A/Anhui/1/2013|EPI_ISL_138739|NS|E1|WHO Chinese National Influenza Center
>EPI439510|A/Anhui/1/2013|EPI_ISL_138739|NS|E1|WHO-Chinese-National-Influenza-Center
atggattccaatactgtgtcaagcttccaggtagactgctttctttggcatgtccgcaaacgatttgcagaccaagaaat
gggtgatgccccatttctagaccggcttcgccgagatcagaagtccctgagaggaagaagcagcactcttggtctggaca
tcagaactgccacgcgtgaaggaaagcatatagtggagcggattttagaggaagagtcagatgaagcatttaaaatgagt
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