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BioPAX grounding improvements #390

Merged
merged 13 commits into from
Feb 6, 2018
Merged

BioPAX grounding improvements #390

merged 13 commits into from
Feb 6, 2018

Commits on Feb 6, 2018

  1. Map CAS to ChEBI in ChEBI client

    @bgyori
    bgyori committed Feb 6, 2018
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  2. Use CAS/ChEBI lookup in BioPAX processor

    @bgyori
    bgyori committed Feb 6, 2018
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  3. Update resources readme with CAS/ChEBI mapping

    @bgyori
    bgyori committed Feb 6, 2018
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  4. Implement getting proper CAS to ChEBI map

    @bgyori
    bgyori committed Feb 6, 2018
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  5. Add ChEBI mapping to primary IDs

    @bgyori
    bgyori committed Feb 6, 2018
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  6. Map to primary ChEBI IDs in CAS map

    @bgyori
    bgyori committed Feb 6, 2018
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  7. Update CAS to ChEBI map with primary IDs

    @bgyori
    bgyori committed Feb 6, 2018
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  8. Add manually mapped CAS to ChEBI entries

    @bgyori
    bgyori committed Feb 6, 2018
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  9. Handle extra chemical groundings beyond ChEBI

    @bgyori
    bgyori committed Feb 6, 2018
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  10. Handle Mirbase IDs for microRNAs

    @bgyori
    bgyori committed Feb 6, 2018
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  11. Generalize RNA grounding beyond MIRBASE

    @bgyori
    bgyori committed Feb 6, 2018
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  12. Handle a few more cases for RNA grounding

    @bgyori
    bgyori committed Feb 6, 2018
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  13. Handle missing entity reference

    @bgyori
    bgyori committed Feb 6, 2018
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